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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7704-RA through 18771 annotations produced 1 hits



chr2R:6764807-6767175 (-) // 100.0 // (TBP-associated factor 80):

Annotation Number : CG7704
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1627331_at
Accessions : protein= , nucleotide= NP_476957;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0006367 // transcription initiation from RNA polymerase II promoter
FlyMine data for full length.
Homophila reports that CG7704 is a close match (5e-12) to human gene BRWD3;MRX93 (NP_694984), a gene associated with Mental retardation, X-linked 93, 300659 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain104 34 of 4 1.00None
Head57 44 of 4 0.60Down
Eye40 34 of 4 0.40Down
Thoracicoabdominal ganglion66 14 of 4 0.70Down
Salivary gland78 44 of 4 0.78None
Crop114 24 of 4 1.10None
Midgut47 44 of 4 0.50Down
Tubule71 44 of 4 0.70Down
Hindgut60 14 of 4 0.60Down
Heart38 24 of 4 0.39Down
Fat body49 44 of 4 0.50Down
Ovary166 34 of 4 1.70Up
Testis15 14 of 4 0.20Down
Male accessory glands74 44 of 4 0.70None
Virgin spermatheca52 34 of 4 0.52Down
Mated spermatheca56 14 of 4 0.56Down
Adult carcass52 54 of 4 0.50Down
Larval CNS145 94 of 4 1.45Up
Larval Salivary gland102 34 of 4 1.02None
Larval midgut49 54 of 4 0.49Down
Larval tubule75 14 of 4 0.80None
Larval hindgut56 24 of 4 0.57Down
Larval fat body39 34 of 4 0.40Down
Larval trachea63 64 of 4 0.63Down
Larval carcass63 34 of 4 0.63Down
S2 cells (growing)135 44 of 4 1.36Up
Whole fly100 104 of 4

Looking for CG7704-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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