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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG7707-RA through 18771 annotations produced 1 hits


(CG7707):

Annotation Number : CG7707
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036703
Gbrowse : chr3L:17236535-17237848 (+) // 99.48 //
Probeset : 1634057_at
Accessions : protein= NP_648962;, nucleotide= NM_140705;
FlyMine data for FBgn0036703.
BDGP gene expression has embryonic in situ data for CG7707: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0036703 available for purchase.
VDRC has 1 RNAi stocks for FBgn0036703 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland2 ± 10 of 4 0.05Down
Crop0 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule0 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.03Down
Fat body1 ± 10 of 4 0.03Down
Ovary0 ± 00 of 4 0.00Down
Testis703 ± 234 of 414.20Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 10 of 4 0.05Down
Mated spermatheca1 ± 00 of 4 0.04Down
Adult carcass2 ± 10 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.02Down
Larval Salivary gland2 ± 10 of 4 0.05Down
Larval midgut0 ± 00 of 4 0.01Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.04Down
Larval fat body76 ± 403 of 4 1.60None
Larval trachea2 ± 31 of 4 0.05Down
Larval carcass1 ± 10 of 4 0.04Down
S2 cells (growing)4 ± 11 of 4 0.10Down
Whole fly49 ± 34 of 4

Looking for CG7707-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime