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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7708-RA through 18771 annotations produced 1 hits



(CG7708):

Annotation Number : CG7708
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038641
Gbrowse : chr3R:14506327-14511029 (+) // 100.0 //
Probeset : 1624129_s_at
Accessions : protein= NP_650743; /// NP_732369;, nucleotide= NM_142486; /// NM_169832;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005298 // proline:sodium symporter activity
FlyMine data for FBgn0038641.
BDGP gene expression has embryonic in situ data for CG7708: 17 pix of staining in 6 body parts.
TRiP has 1 RNAi stocks for FBgn0038641 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038641 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1331 ± 604 of 459.00Up
Head209 ± 84 of 4 9.30Up
Eye89 ± 144 of 4 3.96Up
Thoracicoabdominal ganglion1225 ± 424 of 454.30Up
Salivary gland6 ± 40 of 4 0.29Down
Crop4 ± 10 of 4 0.20Down
Midgut1 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut2 ± 00 of 4 0.10Down
Heart3 ± 10 of 4 0.16Down
Fat body13 ± 43 of 4 0.58Down
Ovary0 ± 00 of 4 0.00Down
Testis2 ± 10 of 4 0.10Down
Male accessory glands3 ± 20 of 4 0.10Down
Virgin spermatheca18 ± 33 of 4 0.84None
Mated spermatheca23 ± 83 of 4 1.05None
Adult carcass25 ± 34 of 4 1.10None
Larval CNS457 ± 644 of 420.30Up
Larval Salivary gland2 ± 10 of 4 0.11Down
Larval midgut5 ± 10 of 4 0.25Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut4 ± 11 of 4 0.19Down
Larval fat body3 ± 10 of 4 0.20Down
Larval trachea3 ± 20 of 4 0.14Down
Larval carcass7 ± 00 of 4 0.32Down
S2 cells (growing)2 ± 01 of 4 0.11Down
Whole fly22 ± 24 of 4

Looking for CG7708-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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