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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7717-RA through 18771 annotations produced 1 hits



Mekk1 (Mekk1):

Annotation Number : CG7717
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024329
Gbrowse : chr3R:14558754-14569280 (-) // 100.0 //
Probeset : 1639526_a_at
Accessions : protein= NP_650750; /// NP_732373;, nucleotide= NM_142493; /// NM_169833;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0024329.
Homophila reports that CG7717 is a close match (8e-11) to human gene LYK5;PMSE (NP_001003786), a gene associated with Polyhydramnios, megalencephaly, and symptomatic epilepsy, 611087 (3).
BioGrid reports that CG7717 interacts with CG10610 .
TRiP has 2 RNAi stocks for FBgn0024329 available for purchase.
VDRC has 3 RNAi stocks for FBgn0024329 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain123 ± 14 of 4 0.80None
Head114 ± 74 of 4 0.70None
Eye161 ± 84 of 4 1.02None
Thoracicoabdominal ganglion163 ± 74 of 4 1.00None
Salivary gland173 ± 104 of 4 1.10None
Crop220 ± 84 of 4 1.40None
Midgut166 ± 34 of 4 1.00None
Tubule424 ± 164 of 4 2.70Up
Hindgut232 ± 74 of 4 1.50Up
Heart134 ± 74 of 4 0.85None
Fat body119 ± 74 of 4 0.75None
Ovary330 ± 44 of 4 2.10Up
Testis32 ± 24 of 4 0.20Down
Male accessory glands179 ± 44 of 4 1.10None
Virgin spermatheca259 ± 54 of 4 1.64Up
Mated spermatheca282 ± 194 of 4 1.78Up
Adult carcass127 ± 34 of 4 0.80None
Larval CNS171 ± 64 of 4 1.08None
Larval Salivary gland119 ± 94 of 4 0.75None
Larval midgut234 ± 84 of 4 1.48Up
Larval tubule330 ± 74 of 4 2.10Up
Larval hindgut243 ± 104 of 4 1.54Up
Larval fat body130 ± 64 of 4 0.80None
Larval trachea185 ± 164 of 4 1.17None
Larval carcass246 ± 134 of 4 1.56Up
S2 cells (growing)333 ± 94 of 4 2.10Up
Whole fly158 ± 214 of 4

Looking for CG7717-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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