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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7720-RB through 18771 annotations produced 1 hits



(CG7720):

Annotation Number : CG7720
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038652
Gbrowse : chr3R:14584955-14620876 (-) // 100.0 //
Probeset : 1630635_s_at
Accessions : protein= NP_001163649; /// NP_001163650; /// NP_001163651; /// NP_650753; /// NP_732375;, nucleotide= NM_001170178; /// NM_001170179; /// NM_001170180; /// NM_142496; /// NM_169834;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008507 // sodium:iodide symporter activity /
FlyMine data for FBgn0038652.
BDGP gene expression has embryonic in situ data for CG7720: 16 pix of staining in 5 body parts.
Homophila reports that CG7720 is a close match (6e-63) to human gene SLC5A5;NIS (NP_000444), a gene associated with Hypothyroidism, congenital, 274400 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 ± 14 of 4 0.10Down
Head203 ± 114 of 4 1.20None
Eye144 ± 184 of 4 0.83None
Thoracicoabdominal ganglion28 ± 14 of 4 0.20Down
Salivary gland2529 ± 1014 of 414.45Up
Crop240 ± 54 of 4 1.40Up
Midgut402 ± 424 of 4 2.30Up
Tubule3725 ± 5084 of 421.30Up
Hindgut117 ± 74 of 4 0.70Down
Heart189 ± 64 of 4 1.08None
Fat body251 ± 184 of 4 1.43Up
Ovary7 ± 13 of 4 0.00Down
Testis35 ± 14 of 4 0.20Down
Male accessory glands29 ± 54 of 4 0.20Down
Virgin spermatheca520 ± 264 of 4 2.97Up
Mated spermatheca327 ± 144 of 4 1.87Up
Adult carcass345 ± 144 of 4 2.00Up
Larval CNS12 ± 14 of 4 0.07Down
Larval Salivary gland360 ± 234 of 4 2.06Up
Larval midgut1194 ± 404 of 4 6.82Up
Larval tubule370 ± 284 of 4 2.10Up
Larval hindgut129 ± 94 of 4 0.74None
Larval fat body88 ± 94 of 4 0.50Down
Larval trachea305 ± 954 of 4 1.75None
Larval carcass105 ± 254 of 4 0.60None
S2 cells (growing)61 ± 74 of 4 0.35Down
Whole fly175 ± 174 of 4

Looking for CG7720-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime