Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7738-RA through 18771 annotations produced 1 hits



(CG34227):

Annotation Number : CG7738
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085256
Gbrowse : chr2R:7135627-7136119 (+) // 100.0 //
Probeset : 1634525_at
Accessions : protein= NP_001097269;, nucleotide= NM_001103799;
Pathway : 0005615 // extracellular space // inferred from direct assay
FlyMine data for FBgn0085256.
VDRC has 2 RNAi stocks for FBgn0085256 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 ± 24 of 4 0.20Down
Head4045 ± 5004 of 420.40Up
Eye3177 ± 4344 of 416.02Up
Thoracicoabdominal ganglion6 ± 20 of 4 0.00Down
Salivary gland14 ± 60 of 4 0.07Down
Crop627 ± 1664 of 4 3.20None
Midgut6 ± 20 of 4 0.00Down
Tubule6 ± 10 of 4 0.00Down
Hindgut411 ± 1484 of 4 2.10None
Heart28 ± 221 of 4 0.15Down
Fat body2 ± 10 of 4 0.01Down
Ovary7 ± 20 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands12 ± 41 of 4 0.10Down
Virgin spermatheca97 ± 144 of 4 0.49None
Mated spermatheca389 ± 644 of 4 1.97None
Adult carcass151 ± 244 of 4 0.80None
Larval CNS9 ± 70 of 4 0.05Down
Larval Salivary gland16 ± 20 of 4 0.08Down
Larval midgut27 ± 30 of 4 0.14Down
Larval tubule18 ± 91 of 4 0.10Down
Larval hindgut1545 ± 4164 of 4 7.80Up
Larval fat body38 ± 112 of 4 0.20Down
Larval trachea5289 ± 10104 of 426.67Up
Larval carcass5072 ± 5684 of 425.58Up
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly198 ± 344 of 4

Looking for CG7738-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime