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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7755-RA through 18771 annotations produced 1 hits



(CG7755):

Annotation Number : CG7755
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034105
Gbrowse : chr2R:12169131-12170451 (-) // 100.0 //
Probeset : 1631872_at
Accessions : protein= NP_611110;, nucleotide= NM_137266;
Pathway : 0005759 // mitochondrial matrix // inferred from sequence or structural similarity
Interpro : "0000287 // magnesium ion binding // inferred from electronic annotation /// 0004449 // isocitrate dehydrogenase (NAD+)
FlyMine data for FBgn0034105.
BDGP gene expression has embryonic in situ data for CG7755: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0034105 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 10 of 4 0.10Down
Head7 20 of 4 0.10Down
Eye2 00 of 4 0.03Down
Thoracicoabdominal ganglion4 00 of 4 0.00Down
Salivary gland17 10 of 4 0.21Down
Crop10 10 of 4 0.10Down
Midgut6 20 of 4 0.10Down
Tubule7 10 of 4 0.10Down
Hindgut4 10 of 4 0.10Down
Heart2 00 of 4 0.03Down
Fat body11 50 of 4 0.14Down
Ovary4 00 of 4 0.10Down
Testis821 144 of 410.00Up
Male accessory glands16 41 of 4 0.20Down
Virgin spermatheca11 00 of 4 0.14Down
Mated spermatheca14 30 of 4 0.17Down
Adult carcass15 20 of 4 0.20Down
Larval CNS5 20 of 4 0.07Down
Larval Salivary gland4 20 of 4 0.05Down
Larval midgut5 20 of 4 0.07Down
Larval tubule12 31 of 4 0.10Down
Larval hindgut5 20 of 4 0.06Down
Larval fat body47 191 of 4 0.60None
Larval trachea6 41 of 4 0.08Down
Larval carcass3 00 of 4 0.05Down
S2 cells (growing)9 00 of 4 0.12Down
Whole fly82 44 of 4

Looking for CG7755-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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