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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7756-RA through 18771 annotations produced 1 hits



Heat shock protein cognate 2 (Hsc70-2):

Annotation Number : CG7756
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001217
Gbrowse : chr3R:8870480-8873106 (+) // 100.0 //
Probeset : 1636055_at
Accessions : protein= NP_524339;, nucleotide= NM_079615;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electro
FlyMine data for FBgn0001217.
TRiP has 1 RNAi stocks for FBgn0001217 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001217 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head6 00 of 4 0.10Down
Eye1 10 of 4 0.01Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland7 20 of 4 0.06Down
Crop95 24 of 4 0.70Down
Midgut22 31 of 4 0.20Down
Tubule4 00 of 4 0.00Down
Hindgut6 22 of 4 0.10Down
Heart42 54 of 4 0.33Down
Fat body3 30 of 4 0.03Down
Ovary1 00 of 4 0.00Down
Testis1618 174 of 412.50Up
Male accessory glands20 31 of 4 0.20Down
Virgin spermatheca1 00 of 4 0.01Down
Mated spermatheca1 00 of 4 0.01Down
Adult carcass7 21 of 4 0.10Down
Larval CNS1 10 of 4 0.01Down
Larval Salivary gland1 00 of 4 0.01Down
Larval midgut14 33 of 4 0.11Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut3 00 of 4 0.02Down
Larval fat body162 883 of 4 1.30None
Larval trachea4 61 of 4 0.03Down
Larval carcass6 01 of 4 0.05Down
S2 cells (growing)1 00 of 4 0.01Down
Whole fly129 94 of 4

Looking for CG7756-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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