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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7758-RA through 18771 annotations produced 1 hits



pumpless (ppl):

Annotation Number : CG7758
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027945
Gbrowse : chr3L:21273587-21274601 (-) // 100.0 //
Probeset : 1626366_at
Accessions : protein= NP_524197;, nucleotide= NM_079473;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred fro
FlyMine data for FBgn0027945.
BDGP gene expression has embryonic in situ data for ppl: 25 pix of staining in 7 body parts.
Homophila reports that CG7758 is a close match (4e-35) to human gene GCSH;NKH (NP_004474), a gene associated with Glycine encephalopathy, 605899 (3).
TRiP has 1 RNAi stocks for FBgn0027945 available for purchase.
VDRC has 3 RNAi stocks for FBgn0027945 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain308 ± 64 of 4 0.60Down
Head1176 ± 594 of 4 2.10Up
Eye624 ± 594 of 4 1.12None
Thoracicoabdominal ganglion424 ± 74 of 4 0.80Down
Salivary gland314 ± 194 of 4 0.57Down
Crop211 ± 34 of 4 0.40Down
Midgut133 ± 24 of 4 0.20Down
Tubule412 ± 154 of 4 0.70Down
Hindgut337 ± 84 of 4 0.60Down
Heart1989 ± 794 of 4 3.58Up
Fat body3170 ± 2724 of 4 5.71Up
Ovary370 ± 24 of 4 0.70Down
Testis1545 ± 314 of 4 2.80Up
Male accessory glands91 ± 54 of 4 0.20Down
Virgin spermatheca4458 ± 1654 of 4 8.03Up
Mated spermatheca3417 ± 1814 of 4 6.15Up
Adult carcass1708 ± 624 of 4 3.10Up
Larval CNS304 ± 254 of 4 0.55Down
Larval Salivary gland235 ± 114 of 4 0.42Down
Larval midgut158 ± 94 of 4 0.29Down
Larval tubule455 ± 104 of 4 0.80Down
Larval hindgut348 ± 214 of 4 0.63Down
Larval fat body4752 ± 3954 of 4 8.60Up
Larval trachea228 ± 284 of 4 0.41Down
Larval carcass262 ± 224 of 4 0.47Down
S2 cells (growing)158 ± 04 of 4 0.29Down
Whole fly555 ± 134 of 4

Looking for CG7758-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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