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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7765-RA through 18771 annotations produced 1 hits



kinesin (Khc):

Annotation Number : CG7765
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001308
Gbrowse : chr2R:12154469-12159483 (-) // 100.0 //
Probeset : 1641312_at
Accessions : protein= NP_476590;, nucleotide= NM_057242;
Pathway : nurse cell to oocyte // traceable author statement /// 0007310 // oocyte dorsal/ventral axis specification // inferred
Interpro : 0005739 // mitochondrion // inferred from direct assay /// 0005871 // kinesin complex // inferred from direct assay ///
FlyMine data for FBgn0001308.
Homophila reports that CG7765 is a close match (2e-50) to human gene CFEOM1;FEOM1;KIAA1708;KIF21A (NP_060111), a gene associated with Fibrosis of extraocular muscles, congenital, 1, 135700 (3).
BioGrid reports that CG7765 interacts with CG9949 CG7727 CG7727 CG10952 CG9206 CG7507 CG8269 CG12348 CG11680 CG9907 .
TRiP has 3 RNAi stocks for FBgn0001308 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001308 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain217 ± 54 of 4 1.10None
Head168 ± 54 of 4 0.90None
Eye156 ± 104 of 4 0.81None
Thoracicoabdominal ganglion269 ± 54 of 4 1.40Up
Salivary gland195 ± 104 of 4 1.01None
Crop235 ± 44 of 4 1.20None
Midgut264 ± 104 of 4 1.40Up
Tubule261 ± 104 of 4 1.30Up
Hindgut248 ± 54 of 4 1.30Up
Heart189 ± 104 of 4 0.98None
Fat body156 ± 174 of 4 0.81None
Ovary278 ± 44 of 4 1.40Up
Testis70 ± 24 of 4 0.40Down
Male accessory glands165 ± 24 of 4 0.90None
Virgin spermatheca153 ± 34 of 4 0.79None
Mated spermatheca184 ± 74 of 4 0.95None
Adult carcass178 ± 44 of 4 0.90None
Larval CNS259 ± 114 of 4 1.34Up
Larval Salivary gland280 ± 114 of 4 1.45Up
Larval midgut247 ± 114 of 4 1.28None
Larval tubule205 ± 84 of 4 1.10None
Larval hindgut283 ± 84 of 4 1.47Up
Larval fat body151 ± 124 of 4 0.80None
Larval trachea228 ± 24 of 4 1.18None
Larval carcass227 ± 104 of 4 1.17None
S2 cells (growing)327 ± 114 of 4 1.69Up
Whole fly193 ± 184 of 4

Looking for CG7765-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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