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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7770-RA through 18771 annotations produced 1 hits



(CG7770):

Annotation Number : CG7770
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036918
Gbrowse : chr3L:19916792-19917591 (+) // 99.37 //
Probeset : 1635177_at
Accessions : protein= NP_649159;, nucleotide= NM_140902;
Pathway : 0016272 // prefoldin complex // inferred from electronic annotation /// 0016272 // prefoldin complex // inferred from se
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0051082 // unfolded protein binding // inferred fro
FlyMine data for FBgn0036918.
VDRC has 3 RNAi stocks for FBgn0036918 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain403 ± 104 of 4 0.90None
Head343 ± 124 of 4 0.80Down
Eye435 ± 174 of 4 0.99None
Thoracicoabdominal ganglion373 ± 154 of 4 0.80Down
Salivary gland310 ± 214 of 4 0.71Down
Crop434 ± 224 of 4 1.00None
Midgut366 ± 54 of 4 0.80Down
Tubule152 ± 44 of 4 0.30Down
Hindgut381 ± 104 of 4 0.90None
Heart267 ± 24 of 4 0.61Down
Fat body229 ± 154 of 4 0.52Down
Ovary697 ± 174 of 4 1.60Up
Testis751 ± 174 of 4 1.70Up
Male accessory glands378 ± 174 of 4 0.90None
Virgin spermatheca153 ± 84 of 4 0.35Down
Mated spermatheca175 ± 104 of 4 0.40Down
Adult carcass185 ± 104 of 4 0.40Down
Larval CNS644 ± 234 of 4 1.46Up
Larval Salivary gland491 ± 294 of 4 1.12None
Larval midgut293 ± 174 of 4 0.67Down
Larval tubule304 ± 44 of 4 0.70Down
Larval hindgut389 ± 104 of 4 0.88None
Larval fat body248 ± 224 of 4 0.60Down
Larval trachea665 ± 804 of 4 1.51Up
Larval carcass493 ± 504 of 4 1.12None
S2 cells (growing)539 ± 54 of 4 1.23Up
Whole fly440 ± 204 of 4

Looking for CG7770-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime