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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7772-RA through 18771 annotations produced 1 hits



(CG7772):

Annotation Number : CG7772
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030883
Gbrowse : chrX:17800055-17801317 (-) // 100.0 //
Probeset : 1638147_at
Accessions : protein= NP_573257;, nucleotide= NM_133029;
Interpro : 0004089 // carbonate dehydratase activity // inferred from electronic annotation /// 0008270 // zinc ion binding // infe
FlyMine data for FBgn0030883.
VDRC has 3 RNAi stocks for FBgn0030883 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain227 ± 74 of 4 1.50Up
Head211 ± 84 of 4 1.40Up
Eye246 ± 124 of 4 1.64Up
Thoracicoabdominal ganglion385 ± 154 of 4 2.60Up
Salivary gland196 ± 54 of 4 1.31Up
Crop345 ± 164 of 4 2.30Up
Midgut78 ± 54 of 4 0.50Down
Tubule101 ± 54 of 4 0.70Down
Hindgut215 ± 64 of 4 1.40Up
Heart105 ± 34 of 4 0.70Down
Fat body104 ± 154 of 4 0.70Down
Ovary192 ± 44 of 4 1.30Up
Testis300 ± 64 of 4 2.00Up
Male accessory glands63 ± 24 of 4 0.40Down
Virgin spermatheca70 ± 44 of 4 0.47Down
Mated spermatheca61 ± 44 of 4 0.41Down
Adult carcass198 ± 44 of 4 1.30Up
Larval CNS63 ± 64 of 4 0.42Down
Larval Salivary gland102 ± 24 of 4 0.68Down
Larval midgut87 ± 64 of 4 0.58Down
Larval tubule103 ± 24 of 4 0.70Down
Larval hindgut121 ± 94 of 4 0.81Down
Larval fat body96 ± 164 of 4 0.60Down
Larval trachea105 ± 44 of 4 0.70Down
Larval carcass83 ± 34 of 4 0.56Down
S2 cells (growing)56 ± 24 of 4 0.38Down
Whole fly150 ± 34 of 4

Looking for CG7772-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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