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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7780-RA through 18771 annotations produced 1 hits



acid DNase (DNaseII):

Annotation Number : CG7780
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000477
Gbrowse : chr3R:13845098-13846883 (+) // 100.0 //
Probeset : 1640898_at
Accessions : protein= NP_650672;, nucleotide= NM_142415;
Interpro : 0004531 // deoxyribonuclease II activity // inferred from sequence or structural similarity /// 0004531 // deoxyribonucl
FlyMine data for FBgn0000477.
BDGP gene expression has embryonic in situ data for DNaseII: 26 pix of staining in 11 body parts.
BioGrid reports that CG7780 interacts with CG8928 CG7930 CG8357 .
VDRC has 1 RNAi stocks for FBgn0000477 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain147 ± 64 of 4 1.40None
Head527 ± 234 of 4 4.90Up
Eye175 ± 224 of 4 1.64None
Thoracicoabdominal ganglion225 ± 184 of 4 2.10Up
Salivary gland11159 ± 5484 of 4104.78Up
Crop93 ± 104 of 4 0.90None
Midgut48 ± 24 of 4 0.50Down
Tubule85 ± 124 of 4 0.80None
Hindgut210 ± 134 of 4 2.00Up
Heart542 ± 564 of 4 5.09Up
Fat body778 ± 754 of 4 7.31Up
Ovary1 ± 00 of 4 0.00Down
Testis5 ± 10 of 4 0.10Down
Male accessory glands8 ± 30 of 4 0.10Down
Virgin spermatheca1354 ± 584 of 412.72Up
Mated spermatheca927 ± 1184 of 4 8.70Up
Adult carcass531 ± 454 of 4 5.00Up
Larval CNS67 ± 94 of 4 0.63None
Larval Salivary gland28 ± 14 of 4 0.26Down
Larval midgut82 ± 154 of 4 0.77None
Larval tubule45 ± 64 of 4 0.40Down
Larval hindgut106 ± 14 of 4 1.00None
Larval fat body1334 ± 1694 of 412.50Up
Larval trachea16 ± 123 of 4 0.16Down
Larval carcass9 ± 31 of 4 0.09Down
S2 cells (growing)4 ± 10 of 4 0.04Down
Whole fly106 ± 154 of 4

Looking for CG7780-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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