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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7781-RA through 18771 annotations produced 1 hits



(CG7781):

Annotation Number : CG7781
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032021
Gbrowse : chr2L:8321279-8325299 (-) // 99.79 //
Probeset : 1639596_at
Accessions : protein= NP_609210;, nucleotide= NM_135366;
FlyMine data for FBgn0032021.
BDGP gene expression has embryonic in situ data for CG7781: 6 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0032021 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1661 594 of 415.80Up
Head685 484 of 4 6.50Up
Eye197 154 of 4 1.88Up
Thoracicoabdominal ganglion2055 354 of 419.60Up
Salivary gland19 32 of 4 0.19Down
Crop10 13 of 4 0.10Down
Midgut5 10 of 4 0.10Down
Tubule3 00 of 4 0.00Down
Hindgut1166 424 of 411.10Up
Heart7 03 of 4 0.07Down
Fat body13 44 of 4 0.13Down
Ovary10 04 of 4 0.10Down
Testis3 03 of 4 0.00Down
Male accessory glands24 14 of 4 0.20Down
Virgin spermatheca13 14 of 4 0.13Down
Mated spermatheca9 14 of 4 0.09Down
Adult carcass63 34 of 4 0.60Down
Larval CNS1273 1124 of 412.15Up
Larval Salivary gland5 00 of 4 0.05Down
Larval midgut6 11 of 4 0.06Down
Larval tubule4 01 of 4 0.00Down
Larval hindgut16 24 of 4 0.16Down
Larval fat body8 21 of 4 0.10Down
Larval trachea6 14 of 4 0.06Down
Larval carcass18 34 of 4 0.18Down
S2 cells (growing)14 24 of 4 0.14Down
Whole fly104 104 of 4

Looking for CG7781-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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