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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7786-RA through 18771 annotations produced 1 hits



(CG7786):

Annotation Number : CG7786
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034096
Gbrowse : chr2R:12121862-12122441 (-) // 100.0 //
Probeset : 1637861_at
Accessions : protein= NP_611101;, nucleotide= NM_137257;
Pathway : DNA-dependent // inferred from electronic annotation"
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0034096.
BioGrid reports that CG7786 interacts with CG8687 CG8309 CG8854 CG9377 .
VDRC has 2 RNAi stocks for FBgn0034096 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 02 of 4 1.00None
Head10 10 of 4 1.40None
Eye4 00 of 4 0.59None
Thoracicoabdominal ganglion9 11 of 4 1.20None
Salivary gland14 30 of 4 1.98None
Crop7 10 of 4 1.00None
Midgut2 10 of 4 0.30None
Tubule5 00 of 4 0.80Down
Hindgut7 10 of 4 1.00None
Heart5 01 of 4 0.72None
Fat body4 10 of 4 0.62None
Ovary5 11 of 4 0.70None
Testis4 10 of 4 0.60None
Male accessory glands10 31 of 4 1.40None
Virgin spermatheca3 10 of 4 0.41None
Mated spermatheca4 10 of 4 0.63None
Adult carcass8 20 of 4 1.10None
Larval CNS5 12 of 4 0.69None
Larval Salivary gland7 11 of 4 0.99None
Larval midgut7 10 of 4 0.93None
Larval tubule10 13 of 4 1.40None
Larval hindgut4 01 of 4 0.65None
Larval fat body13 21 of 4 1.80None
Larval trachea3 31 of 4 0.43None
Larval carcass7 00 of 4 0.93None
S2 cells (growing)5 00 of 4 0.72None
Whole fly7 21 of 4

Looking for CG7786-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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