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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG7800-RA through 18771 annotations produced 1 hits


Annotation Number : CG7800
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037552
Gbrowse : chr3R:4043699-4045468 (+) // 100.0 //
Probeset : 1638964_at
Accessions : protein= NP_649770;, nucleotide= NM_141513;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0037552.
Homophila reports that CG7800 is a close match (8e-11) to human gene GREAT;LGR8 (NP_570718), a gene associated with Cryptorchidism, bilateral, 219050 (3).
BioGrid reports that CG7800 interacts with CG9809 .
TRiP has 1 RNAi stocks for FBgn0037552 available for purchase.
VDRC has 4 RNAi stocks for FBgn0037552 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain82 24 of 4 1.00None
Head195 114 of 4 2.40Up
Eye153 114 of 4 1.90Up
Thoracicoabdominal ganglion110 34 of 4 1.40Up
Salivary gland62 64 of 4 0.77None
Crop132 44 of 4 1.60Up
Midgut33 24 of 4 0.40Down
Tubule101 84 of 4 1.30Up
Hindgut65 14 of 4 0.80None
Heart506 274 of 4 6.26Up
Fat body448 334 of 4 5.54Up
Ovary84 44 of 4 1.00None
Testis73 24 of 4 0.90None
Male accessory glands93 44 of 4 1.20None
Virgin spermatheca400 84 of 4 4.95Up
Mated spermatheca512 234 of 4 6.34Up
Adult carcass222 174 of 4 2.80Up
Larval CNS170 274 of 4 2.11Up
Larval Salivary gland207 84 of 4 2.56Up
Larval midgut42 14 of 4 0.53Down
Larval tubule242 104 of 4 3.00Up
Larval hindgut91 44 of 4 1.13None
Larval fat body447 224 of 4 5.50Up
Larval trachea228 24 of 4 2.83Up
Larval carcass146 74 of 4 1.81Up
S2 cells (growing)1439 264 of 417.78Up
Whole fly80 64 of 4

Looking for CG7800-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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