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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7803-RA through 18771 annotations produced 1 hits



chrX:2341801-2344583 (+) // 100.0 // (Zeste):

Annotation Number : CG7803
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640317_at
Accessions : protein= , nucleotide= NP_001033827; /// NP_525051;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0006727 // ommochrome biosynthetic process // inferred from mutant
FlyMine data for full length.
BioGrid reports that CG7803 interacts with CG7967 CG9610 CG6474 CG6474 CG15191 CG6502 CG6502 CG6502 CG6502 CG6502 CG6502 CG6502 CG6502 CG6502 CG6502 CG6502 CG6502 CG1689 CG9495 CG9495 CG8573 CG10388 CG10388 CG10388 CG10388 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG2759 CG6502 CG6502 CG2674 CG3886 CG3886 CG3886 CG3886 CG8409 CG3905 CG3905 CG3905 CG3905 CG3905 CG3905 CG11387 CG11387 CG12058 CG3827 CG3757 CG3757 CG3757 CG3757 CG18001 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain166 ± 64 of 4 2.10Up
Head71 ± 24 of 4 0.90None
Eye84 ± 24 of 4 1.06None
Thoracicoabdominal ganglion133 ± 04 of 4 1.70Up
Salivary gland103 ± 44 of 4 1.30Up
Crop90 ± 24 of 4 1.10None
Midgut44 ± 34 of 4 0.60Down
Tubule51 ± 24 of 4 0.60Down
Hindgut59 ± 34 of 4 0.70Down
Heart36 ± 34 of 4 0.46Down
Fat body39 ± 24 of 4 0.49Down
Ovary190 ± 34 of 4 2.40Up
Testis87 ± 34 of 4 1.10None
Male accessory glands82 ± 34 of 4 1.00None
Virgin spermatheca48 ± 34 of 4 0.60Down
Mated spermatheca49 ± 14 of 4 0.62Down
Adult carcass52 ± 44 of 4 0.70Down
Larval CNS242 ± 74 of 4 3.05Up
Larval Salivary gland127 ± 44 of 4 1.60Up
Larval midgut45 ± 14 of 4 0.57Down
Larval tubule51 ± 14 of 4 0.60Down
Larval hindgut66 ± 24 of 4 0.83None
Larval fat body44 ± 54 of 4 0.60Down
Larval trachea95 ± 14 of 4 1.19None
Larval carcass74 ± 44 of 4 0.94None
S2 cells (growing)121 ± 64 of 4 1.53Up
Whole fly79 ± 64 of 4

Looking for CG7803-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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