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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7804-RA through 18771 annotations produced 1 hits



(CG7804):

Annotation Number : CG7804
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036496
Gbrowse : chr3L:15465296-15467210 (-) // 100.0 //
Probeset : 1632435_at
Accessions : protein= NP_648764;, nucleotide= NM_140507;
Pathway : 0030530 // heterogeneous nuclear ribonucleoprotein complex // inferred from sequence or structural similarity
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0036496.
BDGP gene expression has embryonic in situ data for CG7804: 8 pix of staining in 1 body parts.
Homophila reports that CG7804 is a close match (2e-82) to human gene ALS10;TARDBP;TDP43 (NP_031401), a gene associated with Amyotrophic lateral sclerosis 10, 612069 (3).
TRiP has 2 RNAi stocks for FBgn0036496 available for purchase.
VDRC has 5 RNAi stocks for FBgn0036496 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head3 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion4 ± 00 of 4 0.10Down
Salivary gland14 ± 60 of 4 0.50None
Crop16 ± 34 of 4 0.60Down
Midgut6 ± 20 of 4 0.20Down
Tubule4 ± 00 of 4 0.20Down
Hindgut4 ± 10 of 4 0.10Down
Heart2 ± 10 of 4 0.09Down
Fat body8 ± 30 of 4 0.27Down
Ovary2 ± 02 of 4 0.10Down
Testis438 ± 134 of 414.80Up
Male accessory glands7 ± 10 of 4 0.20Down
Virgin spermatheca2 ± 10 of 4 0.07Down
Mated spermatheca3 ± 10 of 4 0.11Down
Adult carcass5 ± 20 of 4 0.20Down
Larval CNS4 ± 23 of 4 0.15Down
Larval Salivary gland3 ± 10 of 4 0.12Down
Larval midgut4 ± 10 of 4 0.17Down
Larval tubule4 ± 11 of 4 0.20Down
Larval hindgut3 ± 11 of 4 0.12Down
Larval fat body97 ± 414 of 4 3.30None
Larval trachea4 ± 21 of 4 0.14Down
Larval carcass5 ± 10 of 4 0.18Down
S2 cells (growing)5 ± 11 of 4 0.19Down
Whole fly29 ± 24 of 4

Looking for CG7804-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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