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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7808-RD through 18771 annotations produced 1 hits



Ribosomal protein S8 (RpS8):

Annotation Number : CG7808
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039713
Gbrowse : chr3R:25687588-25688935 (+) // 100.0 //
Probeset : 1626931_a_at
Accessions : protein= NP_651740;, nucleotide= NM_143483;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0039713.
BDGP gene expression has embryonic in situ data for CG7808: 4 pix of staining in 1 body parts.
BioGrid reports that CG7808 interacts with CG8414 CG9986 .
VDRC has 3 RNAi stocks for FBgn0039713 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3025 914 of 4 0.80Down
Head4365 1594 of 4 1.10None
Eye6302 1684 of 4 1.64Up
Thoracicoabdominal ganglion3613 864 of 4 0.90None
Salivary gland9268 2194 of 4 2.41Up
Crop4881 2604 of 4 1.30Up
Midgut4513 1404 of 4 1.20Up
Tubule2066 454 of 4 0.50Down
Hindgut4805 844 of 4 1.30Up
Heart6800 4754 of 4 1.77Up
Fat body4997 6344 of 4 1.30Up
Ovary3013 594 of 4 0.80Down
Testis881 304 of 4 0.20Down
Male accessory glands7700 2294 of 4 2.00Up
Virgin spermatheca2073 1924 of 4 0.54Down
Mated spermatheca2626 5004 of 4 0.68None
Adult carcass5026 1424 of 4 1.30Up
Larval CNS2420 1454 of 4 0.63Down
Larval Salivary gland6854 3544 of 4 1.79Up
Larval midgut3249 794 of 4 0.85Down
Larval tubule3927 554 of 4 1.00None
Larval hindgut3637 434 of 4 0.95None
Larval fat body5939 6624 of 4 1.50Up
Larval trachea6102 2044 of 4 1.59Up
Larval carcass4083 2684 of 4 1.06None
S2 cells (growing)4287 1214 of 4 1.12None
Whole fly3839 1514 of 4

Looking for CG7808-RD. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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