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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7809-RA through 18771 annotations produced 1 hits



Grasp65 (Grasp65):

Annotation Number : CG7809
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036919
Gbrowse : chr3L:19918160-19919979 (+) // 100.0 //
Probeset : 1628710_at
Accessions : protein= NP_649160;, nucleotide= NM_140903;
Pathway : 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inf
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0036919.
BioGrid reports that CG7809 interacts with CG8292 CG9699 CG9291 CG9381 CG9480 CG9624 CG9764 CG9894 CG8085 CG8581 .
TRiP has 1 RNAi stocks for FBgn0036919 available for purchase.
VDRC has 1 RNAi stocks for FBgn0036919 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain118 34 of 4 0.60Down
Head156 94 of 4 0.80None
Eye120 64 of 4 0.65Down
Thoracicoabdominal ganglion108 54 of 4 0.60Down
Salivary gland1809 1324 of 4 9.70Up
Crop181 114 of 4 1.00None
Midgut223 74 of 4 1.20None
Tubule179 134 of 4 1.00None
Hindgut173 54 of 4 0.90None
Heart146 34 of 4 0.78None
Fat body247 554 of 4 1.32None
Ovary212 74 of 4 1.10None
Testis102 24 of 4 0.60Down
Male accessory glands1591 824 of 4 8.50Up
Virgin spermatheca234 164 of 4 1.26None
Mated spermatheca236 214 of 4 1.27None
Adult carcass190 104 of 4 1.00None
Larval CNS136 74 of 4 0.73Down
Larval Salivary gland1620 1554 of 4 8.69Up
Larval midgut198 114 of 4 1.07None
Larval tubule325 74 of 4 1.70Up
Larval hindgut246 74 of 4 1.32Up
Larval fat body336 484 of 4 1.80Up
Larval trachea197 454 of 4 1.06None
Larval carcass277 94 of 4 1.49Up
S2 cells (growing)417 104 of 4 2.24Up
Whole fly186 144 of 4

Looking for CG7809-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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