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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7815-RA through 18771 annotations produced 1 hits



ran-like (ran-like):

Annotation Number : CG7815
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036497
Gbrowse : chr3L:15477492-15478502 (-) // 100.0 //
Probeset : 1638085_at
Accessions : protein= NP_524082;, nucleotide= NM_079358;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0036497.
Homophila reports that CG7815 is a close match (8e-11) to human gene KRAS2;NS3;RASK2 (NP_203524), a gene associated with Bladder cancer, 109800 (3);Breast cancer, somatic, 114480 (3);Costello syndrome, 218040 (3);Leukemia, acute myelogenous (3);Lung cancer, 211980 (3);Noonan syndrome 3, 609942 (3);Pancreatic carcinoma, somatic, 260350 (3);Stomach cancer, 137215 (3).
BioGrid reports that CG7815 interacts with CG8417 .
TRiP has 1 RNAi stocks for FBgn0036497 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036497 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye1 00 of 4 0.02Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland11 70 of 4 0.14Down
Crop1 10 of 4 0.00Down
Midgut2 10 of 4 0.00Down
Tubule3 00 of 4 0.00Down
Hindgut2 10 of 4 0.00Down
Heart1 00 of 4 0.02Down
Fat body6 40 of 4 0.07Down
Ovary1 00 of 4 0.00Down
Testis871 524 of 410.60Up
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca2 10 of 4 0.03Down
Mated spermatheca2 00 of 4 0.03Down
Adult carcass6 20 of 4 0.10Down
Larval CNS2 10 of 4 0.03Down
Larval Salivary gland3 10 of 4 0.04Down
Larval midgut1 00 of 4 0.02Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut2 00 of 4 0.03Down
Larval fat body110 634 of 4 1.30None
Larval trachea6 60 of 4 0.07Down
Larval carcass3 10 of 4 0.04Down
S2 cells (growing)3 00 of 4 0.04Down
Whole fly82 74 of 4

Looking for CG7815-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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