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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7816-RF through 18771 annotations produced 1 hits



(CG7816):

Annotation Number : CG7816
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039714
Gbrowse : chr3R:25689420-25694618 (-) // 100.0 //
Probeset : 1630858_s_at
Accessions : protein= NP_733319; /// NP_733320; /// NP_733321; /// NP_733322; /// NP_733323; /// NP_733324;, nucleotide= NM_170440; /// NM_170441; /// NM_170442; /// NM_170443; /// NM_170444; /// NM_170445;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author s
Interpro : 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation
FlyMine data for FBgn0039714.
BDGP gene expression has embryonic in situ data for CG7816: 17 pix of staining in 3 body parts.
Homophila reports that CG7816 is a close match (2e-14) to human gene SLC39A4;ZIP4 (NP_570901), a gene associated with Acrodermatitis enteropathica, 201100 (3).
VDRC has 2 RNAi stocks for FBgn0039714 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain159 74 of 4 0.60Down
Head195 134 of 4 0.70Down
Eye136 44 of 4 0.50Down
Thoracicoabdominal ganglion135 34 of 4 0.50Down
Salivary gland143 124 of 4 0.53Down
Crop172 54 of 4 0.60Down
Midgut839 494 of 4 3.10Up
Tubule401 244 of 4 1.50Up
Hindgut243 54 of 4 0.90None
Heart496 524 of 4 1.82Up
Fat body301 174 of 4 1.10None
Ovary245 34 of 4 0.90None
Testis900 104 of 4 3.30Up
Male accessory glands508 184 of 4 1.90Up
Virgin spermatheca253 334 of 4 0.93None
Mated spermatheca257 384 of 4 0.94None
Adult carcass253 124 of 4 0.90None
Larval CNS66 94 of 4 0.24Down
Larval Salivary gland82 114 of 4 0.30Down
Larval midgut1308 994 of 4 4.80Up
Larval tubule558 194 of 4 2.00Up
Larval hindgut312 444 of 4 1.14None
Larval fat body191 214 of 4 0.70Down
Larval trachea94 224 of 4 0.35Down
Larval carcass164 284 of 4 0.60Down
S2 cells (growing)1061 464 of 4 3.89Up
Whole fly272 194 of 4

Looking for CG7816-RF. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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