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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7818-RA through 18771 annotations produced 1 hits



(CG7818):

Annotation Number : CG7818
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032016
Gbrowse : chr2L:8308439-8309963 (+) // 100.0 //
Probeset : 1638765_at
Accessions : protein= NP_609205;, nucleotide= NM_135361;
Pathway : nucleoside
Interpro : nucleotide and nucleic acid metabolic process // inferred from electronic annotation"
FlyMine data for FBgn0032016.
BDGP gene expression has embryonic in situ data for CG7818: 10 pix of staining in 1 body parts.
BioGrid reports that CG7818 interacts with CG8079 .
VDRC has 5 RNAi stocks for FBgn0032016 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain79 ± 34 of 4 0.70Down
Head43 ± 14 of 4 0.40Down
Eye76 ± 24 of 4 0.66Down
Thoracicoabdominal ganglion65 ± 14 of 4 0.60Down
Salivary gland108 ± 74 of 4 0.94None
Crop84 ± 24 of 4 0.70Down
Midgut67 ± 24 of 4 0.60Down
Tubule70 ± 44 of 4 0.60Down
Hindgut92 ± 14 of 4 0.80Down
Heart69 ± 54 of 4 0.60Down
Fat body42 ± 34 of 4 0.37Down
Ovary227 ± 34 of 4 2.00Up
Testis34 ± 04 of 4 0.30Down
Male accessory glands57 ± 44 of 4 0.50Down
Virgin spermatheca61 ± 54 of 4 0.53Down
Mated spermatheca66 ± 34 of 4 0.57Down
Adult carcass39 ± 34 of 4 0.30Down
Larval CNS259 ± 174 of 4 2.24Up
Larval Salivary gland169 ± 64 of 4 1.46Up
Larval midgut59 ± 54 of 4 0.51Down
Larval tubule97 ± 34 of 4 0.80Down
Larval hindgut104 ± 64 of 4 0.90None
Larval fat body48 ± 14 of 4 0.40Down
Larval trachea184 ± 204 of 4 1.59Up
Larval carcass101 ± 34 of 4 0.88None
S2 cells (growing)223 ± 64 of 4 1.93Up
Whole fly115 ± 54 of 4

Looking for CG7818-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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