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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7823-RA through 18771 annotations produced 1 hits



RhoGDI (RhoGDI):

Annotation Number : CG7823
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036921
Gbrowse : chr3L:19921906-19926032 (+) // 100.0 //
Probeset : 1633804_at
Accessions : protein= NP_649162;, nucleotide= NM_140905;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0005094 // Rho GDP-dissociation inhibitor activity // inferred from sequence or structural similarity /// 0005094 // Rho
FlyMine data for FBgn0036921.
BDGP gene expression has embryonic in situ data for CG7823: 19 pix of staining in 16 body parts.
TRiP has 1 RNAi stocks for FBgn0036921 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036921 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1363 ± 294 of 4 1.40Up
Head1763 ± 934 of 4 1.90Up
Eye4481 ± 624 of 4 4.76Up
Thoracicoabdominal ganglion1243 ± 454 of 4 1.30Up
Salivary gland2905 ± 1494 of 4 3.09Up
Crop2101 ± 484 of 4 2.20Up
Midgut2583 ± 274 of 4 2.70Up
Tubule1152 ± 464 of 4 1.20Up
Hindgut1703 ± 334 of 4 1.80Up
Heart1076 ± 524 of 4 1.14None
Fat body342 ± 304 of 4 0.36Down
Ovary1077 ± 144 of 4 1.10Up
Testis147 ± 94 of 4 0.20Down
Male accessory glands1650 ± 434 of 4 1.80Up
Virgin spermatheca1233 ± 274 of 4 1.31Up
Mated spermatheca1381 ± 544 of 4 1.47Up
Adult carcass427 ± 194 of 4 0.50Down
Larval CNS1442 ± 614 of 4 1.53Up
Larval Salivary gland1689 ± 544 of 4 1.80Up
Larval midgut3252 ± 514 of 4 3.46Up
Larval tubule2574 ± 264 of 4 2.70Up
Larval hindgut2054 ± 94 of 4 2.18Up
Larval fat body2076 ± 2384 of 4 2.20Up
Larval trachea2974 ± 1434 of 4 3.16Up
Larval carcass1879 ± 654 of 4 2.00Up
S2 cells (growing)2317 ± 234 of 4 2.46Up
Whole fly940 ± 384 of 4

Looking for CG7823-RA. 1 entries matched from 18771, in 3 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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