Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7830-RA through 18771 annotations produced 1 hits



(CG7830):

Annotation Number : CG7830
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032015
Gbrowse : chr2L:8306695-8308188 (-) // 100.0 //
Probeset : 1634945_at
Accessions : protein= NP_609204;, nucleotide= NM_135360;
FlyMine data for FBgn0032015.
BDGP gene expression has embryonic in situ data for CG7830: 4 pix of staining in 1 body parts.
Homophila reports that CG7830 is a close match (5e-93) to human gene IAP;MAGT1 (NP_115497), a gene associated with Mental retardation, X-linked 95, 300716 (3).
TRiP has 2 RNAi stocks for FBgn0032015 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032015 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain197 ± 74 of 4 0.70Down
Head287 ± 94 of 4 1.00None
Eye238 ± 94 of 4 0.80Down
Thoracicoabdominal ganglion213 ± 34 of 4 0.70Down
Salivary gland1678 ± 334 of 4 5.62Up
Crop303 ± 44 of 4 1.00None
Midgut545 ± 144 of 4 1.80Up
Tubule671 ± 364 of 4 2.20Up
Hindgut362 ± 64 of 4 1.20Up
Heart350 ± 34 of 4 1.18Up
Fat body313 ± 154 of 4 1.05None
Ovary314 ± 74 of 4 1.10None
Testis224 ± 84 of 4 0.80Down
Male accessory glands2208 ± 974 of 4 7.40Up
Virgin spermatheca887 ± 384 of 4 2.97Up
Mated spermatheca899 ± 504 of 4 3.01Up
Adult carcass268 ± 84 of 4 0.90None
Larval CNS387 ± 214 of 4 1.30Up
Larval Salivary gland2124 ± 274 of 4 7.11Up
Larval midgut332 ± 194 of 4 1.11None
Larval tubule653 ± 204 of 4 2.20Up
Larval hindgut422 ± 104 of 4 1.41Up
Larval fat body682 ± 684 of 4 2.30Up
Larval trachea670 ± 1104 of 4 2.25Up
Larval carcass547 ± 434 of 4 1.83Up
S2 cells (growing)747 ± 114 of 4 2.50Up
Whole fly298 ± 124 of 4

Looking for CG7830-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime