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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7832-RA through 18771 annotations produced 1 hits



lethal (3) L1231 (l(3)L1231):

Annotation Number : CG7832
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086686
Gbrowse : chr3R:10470390-10481423 (-) // 100.0 //
Probeset : 1629496_at
Accessions : protein= NP_650379;, nucleotide= NM_142122;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0086686.
BioGrid reports that CG7832 interacts with CG9797 .
TRiP has 1 RNAi stocks for FBgn0086686 available for purchase.
VDRC has 2 RNAi stocks for FBgn0086686 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain471 ± 194 of 4 5.40Up
Head68 ± 84 of 4 0.80None
Eye274 ± 294 of 4 3.13Up
Thoracicoabdominal ganglion374 ± 424 of 4 4.30Up
Salivary gland64 ± 333 of 4 0.74None
Crop118 ± 74 of 4 1.40Up
Midgut96 ± 44 of 4 1.10None
Tubule76 ± 34 of 4 0.90Down
Hindgut145 ± 94 of 4 1.70Up
Heart215 ± 104 of 4 2.45Up
Fat body77 ± 164 of 4 0.89None
Ovary179 ± 64 of 4 2.00Up
Testis62 ± 24 of 4 0.70Down
Male accessory glands151 ± 124 of 4 1.70Up
Virgin spermatheca56 ± 44 of 4 0.65Down
Mated spermatheca57 ± 44 of 4 0.65Down
Adult carcass98 ± 254 of 4 1.10None
Larval CNS167 ± 384 of 4 1.91Up
Larval Salivary gland75 ± 54 of 4 0.86None
Larval midgut72 ± 84 of 4 0.82None
Larval tubule193 ± 184 of 4 2.20Up
Larval hindgut139 ± 204 of 4 1.59None
Larval fat body73 ± 44 of 4 0.80None
Larval trachea312 ± 354 of 4 3.56Up
Larval carcass64 ± 104 of 4 0.73None
S2 cells (growing)111 ± 14 of 4 1.27Up
Whole fly87 ± 54 of 4

Looking for CG7832-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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