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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7835-RA through 18771 annotations produced 1 hits



minibrain (mnb):

Annotation Number : CG7835
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259168
Gbrowse : chrX:17768420-17769073 (-) // 100.0 //
Probeset : 1627370_at
Accessions : protein= NP_001014750; /// NP_728104; /// NP_728106; /// NP_728107;, nucleotide= NM_001014750; /// NM_001014750; /// NM_167581; /// NM_167581; /// NM_170658; /// NM_170658; /// NM_170659;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trace
FlyMine data for FBgn0259168.
BioGrid reports that CG7835 interacts with CG7864 CG7954 CG9572 .
TRiP has 4 RNAi stocks for FBgn0259168 available for purchase.
VDRC has 4 RNAi stocks for FBgn0259168 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 20 of 4 0.90None
Head11 10 of 4 0.90None
Eye6 11 of 4 0.50Down
Thoracicoabdominal ganglion5 00 of 4 0.50Down
Salivary gland14 20 of 4 1.15None
Crop6 20 of 4 0.50None
Midgut23 22 of 4 1.90Up
Tubule10 10 of 4 0.90None
Hindgut12 31 of 4 1.00None
Heart5 10 of 4 0.48Down
Fat body14 51 of 4 1.14None
Ovary6 00 of 4 0.50Down
Testis6 10 of 4 0.50None
Male accessory glands6 10 of 4 0.50None
Virgin spermatheca9 00 of 4 0.77None
Mated spermatheca14 10 of 4 1.14None
Adult carcass16 10 of 4 1.40None
Larval CNS7 10 of 4 0.63None
Larval Salivary gland8 10 of 4 0.72None
Larval midgut12 30 of 4 0.97None
Larval tubule11 00 of 4 0.90None
Larval hindgut13 21 of 4 1.05None
Larval fat body11 10 of 4 0.90None
Larval trachea9 50 of 4 0.75None
Larval carcass16 20 of 4 1.33None
S2 cells (growing)11 00 of 4 0.94None
Whole fly12 21 of 4

Looking for CG7835-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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