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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7849-RA through 18771 annotations produced 1 hits



/// (CG7849 /// DmirCG7849):

Annotation Number : CG7849
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033060
Gbrowse : chr2R:1964480-1965538 (+) // 100.0 //
Probeset : 1626325_a_at
Accessions : protein= NP_610201; /// NP_724452;, nucleotide= NM_136357; /// NM_165457;
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0009982 // pseudouridine synthase activity // inferred
FlyMine data for FBgn0033060.
BioGrid reports that CG7849 interacts with CG7974 CG9277 CG9934 .
VDRC has 2 RNAi stocks for FBgn0033060 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain102 24 of 4 2.00Up
Head55 44 of 4 1.10None
Eye79 44 of 4 1.52Up
Thoracicoabdominal ganglion109 34 of 4 2.10Up
Salivary gland113 44 of 4 2.17Up
Crop59 24 of 4 1.10None
Midgut36 34 of 4 0.70Down
Tubule41 04 of 4 0.80Down
Hindgut104 54 of 4 2.00Up
Heart49 34 of 4 0.95None
Fat body44 34 of 4 0.84None
Ovary67 14 of 4 1.30Up
Testis46 14 of 4 0.90None
Male accessory glands38 24 of 4 0.70Down
Virgin spermatheca43 34 of 4 0.82None
Mated spermatheca36 14 of 4 0.70Down
Adult carcass55 44 of 4 1.10None
Larval CNS65 24 of 4 1.25Up
Larval Salivary gland36 24 of 4 0.69Down
Larval midgut26 34 of 4 0.51Down
Larval tubule30 04 of 4 0.60Down
Larval hindgut66 54 of 4 1.27None
Larval fat body33 34 of 4 0.60Down
Larval trachea52 44 of 4 1.00None
Larval carcass37 54 of 4 0.72None
S2 cells (growing)57 14 of 4 1.10None
Whole fly52 34 of 4

Looking for CG7849-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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