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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7852-RA through 18771 annotations produced 1 hits



(CG7852):

Annotation Number : CG7852
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035229
Gbrowse : chr3L:1537148-1544826 (+) // 100.0 //
Probeset : 1623043_s_at
Accessions : protein= NP_647620; /// NP_728624; /// NP_995954;, nucleotide= NM_139363; /// NM_167890; /// NM_206232;
FlyMine data for FBgn0035229.
Homophila reports that CG7852 is a close match (1e-16) to human gene CMT4B2;MTMR13;SBF2 (NP_112224), a gene associated with Charcot-Marie-Tooth disease, type 4B2, 604563 (3).
VDRC has 2 RNAi stocks for FBgn0035229 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain476 ± 44 of 4 2.60Up
Head219 ± 84 of 4 1.20Up
Eye189 ± 124 of 4 1.04None
Thoracicoabdominal ganglion464 ± 104 of 4 2.50Up
Salivary gland182 ± 124 of 4 1.00None
Crop105 ± 34 of 4 0.60Down
Midgut51 ± 14 of 4 0.30Down
Tubule67 ± 24 of 4 0.40Down
Hindgut81 ± 54 of 4 0.40Down
Heart113 ± 44 of 4 0.62Down
Fat body194 ± 204 of 4 1.06None
Ovary441 ± 34 of 4 2.40Up
Testis104 ± 64 of 4 0.60Down
Male accessory glands69 ± 94 of 4 0.40Down
Virgin spermatheca171 ± 64 of 4 0.94None
Mated spermatheca174 ± 54 of 4 0.96None
Adult carcass171 ± 104 of 4 0.90None
Larval CNS373 ± 204 of 4 2.04Up
Larval Salivary gland194 ± 114 of 4 1.06None
Larval midgut55 ± 74 of 4 0.30Down
Larval tubule97 ± 54 of 4 0.50Down
Larval hindgut69 ± 24 of 4 0.38Down
Larval fat body116 ± 74 of 4 0.60Down
Larval trachea120 ± 104 of 4 0.66Down
Larval carcass132 ± 44 of 4 0.72Down
S2 cells (growing)122 ± 34 of 4 0.67Down
Whole fly182 ± 104 of 4

Looking for CG7852-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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