FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG7857-RA through 18771 annotations produced 1 hits

(CG7857):

Annotation Number : CG7857
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026738
Gbrowse : chr3L:15496699-15497994 (-) // 100.0 //
Probeset : 1631286_at
Accessions : protein= NP_648769;, nucleotide= NM_140512;
FlyMine data for FBgn0026738.
VDRC has 1 RNAi stocks for FBgn0026738 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	73 ± 0	4 of 4	0.50	Down
Head	56 ± 3	4 of 4	0.40	Down
Eye	48 ± 5	4 of 4	0.34	Down
Thoracicoabdominal ganglion	59 ± 1	4 of 4	0.40	Down
Salivary gland	43 ± 4	3 of 4	0.30	Down
Crop	57 ± 3	4 of 4	0.40	Down
Midgut	62 ± 2	4 of 4	0.40	Down
Tubule	38 ± 3	4 of 4	0.30	Down
Hindgut	46 ± 2	4 of 4	0.30	Down
Heart	63 ± 4	4 of 4	0.44	Down
Fat body	75 ± 8	4 of 4	0.52	Down
Ovary	290 ± 3	4 of 4	2.00	Up
Testis	274 ± 9	4 of 4	1.90	Up
Male accessory glands	37 ± 2	4 of 4	0.30	Down
Virgin spermatheca	25 ± 1	4 of 4	0.18	Down
Mated spermatheca	37 ± 2	4 of 4	0.26	Down
Adult carcass	53 ± 1	4 of 4	0.40	Down
Larval CNS	108 ± 5	4 of 4	0.75	Down
Larval Salivary gland	137 ± 9	4 of 4	0.95	None
Larval midgut	51 ± 0	4 of 4	0.35	Down
Larval tubule	95 ± 5	4 of 4	0.70	Down
Larval hindgut	72 ± 4	4 of 4	0.50	Down
Larval fat body	140 ± 12	4 of 4	1.00	None
Larval trachea	118 ± 17	4 of 4	0.82	None
Larval carcass	114 ± 3	4 of 4	0.79	Down
S2 cells (growing)	128 ± 2	4 of 4	0.89	None
Whole fly	144 ± 5	4 of 4

Looking for CG7857-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720