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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7860-RA through 18771 annotations produced 1 hits



(CG7860):

Annotation Number : CG7860
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030653
Gbrowse : chrX:15463025-15464474 (+) // 100.0 //
Probeset : 1634351_at
Accessions : protein= NP_573039;, nucleotide= NM_132811;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity
Interpro : 0003948 // N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity // inferred from sequence or structural similarity ///
FlyMine data for FBgn0030653.
BDGP gene expression has embryonic in situ data for CG7860: 17 pix of staining in 6 body parts.
Homophila reports that CG7860 is a close match (5e-17) to human gene AGA (NP_000018), a gene associated with Aspartylglucosaminuria (3).
BioGrid reports that CG7860 interacts with CG8495 .
VDRC has 3 RNAi stocks for FBgn0030653 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 ± 14 of 4 0.50Down
Head20 ± 14 of 4 0.30Down
Eye6 ± 10 of 4 0.11Down
Thoracicoabdominal ganglion21 ± 14 of 4 0.30Down
Salivary gland27 ± 12 of 4 0.42Down
Crop13 ± 13 of 4 0.20Down
Midgut52 ± 14 of 4 0.80None
Tubule1376 ± 1344 of 421.10Up
Hindgut67 ± 24 of 4 1.00None
Heart38 ± 84 of 4 0.59Down
Fat body29 ± 154 of 4 0.45Down
Ovary40 ± 04 of 4 0.60Down
Testis309 ± 74 of 4 4.80Up
Male accessory glands116 ± 104 of 4 1.80Up
Virgin spermatheca18 ± 33 of 4 0.28Down
Mated spermatheca14 ± 12 of 4 0.22Down
Adult carcass25 ± 13 of 4 0.40Down
Larval CNS92 ± 54 of 4 1.43Up
Larval Salivary gland62 ± 44 of 4 0.96None
Larval midgut469 ± 1124 of 4 7.20Up
Larval tubule3806 ± 1154 of 458.40Up
Larval hindgut294 ± 394 of 4 4.52Up
Larval fat body565 ± 564 of 4 8.70Up
Larval trachea135 ± 214 of 4 2.08Up
Larval carcass252 ± 404 of 4 3.88Up
S2 cells (growing)49 ± 24 of 4 0.76Down
Whole fly65 ± 44 of 4

Looking for CG7860-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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