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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7861-RA through 18771 annotations produced 1 hits



tubulin-specific chaperone E (tbce):

Annotation Number : CG7861
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033055
Gbrowse : chr2R:1930159-1932469 (+) // 100.0 //
Probeset : 1640333_at
Accessions : protein= NP_610197; /// NP_995747;, nucleotide= NM_136353; /// NM_206025;
Pathway : 0005737 // cytoplasm // inferred from direct assay
FlyMine data for FBgn0033055.
BDGP gene expression has embryonic in situ data for CG7861: 5 pix of staining in 3 body parts.
Homophila reports that CG7861 is a close match (2e-61) to human gene HRD;KCS;KCS1;TBCE (NP_003184), a gene associated with Hypoparathyroidism-retardation-dysmorphism syndrome, 241410 (3);Kenny-Caffey syndrome-1, 244460 (3).
VDRC has 2 RNAi stocks for FBgn0033055 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain261 ± 44 of 4 2.10Up
Head144 ± 14 of 4 1.20Up
Eye139 ± 44 of 4 1.12Up
Thoracicoabdominal ganglion295 ± 124 of 4 2.40Up
Salivary gland113 ± 84 of 4 0.91None
Crop172 ± 24 of 4 1.40Up
Midgut91 ± 64 of 4 0.70Down
Tubule134 ± 44 of 4 1.10Up
Hindgut144 ± 64 of 4 1.20Up
Heart71 ± 54 of 4 0.58Down
Fat body96 ± 94 of 4 0.77Down
Ovary207 ± 34 of 4 1.70Up
Testis231 ± 94 of 4 1.90Up
Male accessory glands49 ± 34 of 4 0.40Down
Virgin spermatheca114 ± 44 of 4 0.92None
Mated spermatheca133 ± 64 of 4 1.07None
Adult carcass118 ± 34 of 4 0.90None
Larval CNS177 ± 104 of 4 1.42Up
Larval Salivary gland213 ± 104 of 4 1.71Up
Larval midgut98 ± 24 of 4 0.79Down
Larval tubule194 ± 74 of 4 1.60Up
Larval hindgut131 ± 44 of 4 1.05None
Larval fat body90 ± 164 of 4 0.70None
Larval trachea137 ± 34 of 4 1.10Up
Larval carcass151 ± 44 of 4 1.22Up
S2 cells (growing)279 ± 14 of 4 2.25Up
Whole fly124 ± 24 of 4

Looking for CG7861-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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