FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG7863-RA through 18771 annotations produced 1 hits

Strica (dream):

Annotation Number : CG7863
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033051
Gbrowse : chr2R:1908371-1910711 (-) // 100.0 //
Probeset : 1632790_at
Accessions : protein= NP_610193;, nucleotide= NM_136349;
Pathway : 0005737 // cytoplasm // inferred from direct assay
Interpro : 0004197 // cysteine-type endopeptidase activity // inferred from sequence or structural similarity /// 0004197 // cystei
FlyMine data for FBgn0033051.
BDGP gene expression has embryonic in situ data for dream: 4 pix of staining in 1 body parts.
Homophila reports that CG7863 is a close match (5e-11) to human gene ALPS2;CASP10;MCH4 (NP_001221), a gene associated with Autoimmune lymphoproliferative syndrome, type II, 603909 (3);Gastric cancer, somatic, 137215 (3);Non-Hodgkin lymphoma, somatic, 605027 (3).
VDRC has 2 RNAi stocks for FBgn0033051 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 0	0 of 4	0.20	Down
Head	11 ± 3	0 of 4	0.30	Down
Eye	1 ± 0	0 of 4	0.05	Down
Thoracicoabdominal ganglion	5 ± 1	0 of 4	0.10	Down
Salivary gland	6 ± 4	0 of 4	0.17	Down
Crop	3 ± 1	0 of 4	0.10	Down
Midgut	212 ± 15	4 of 4	5.50	Up
Tubule	183 ± 27	4 of 4	4.80	Up
Hindgut	46 ± 1	4 of 4	1.20	Up
Heart	18 ± 2	2 of 4	0.48	Down
Fat body	15 ± 4	0 of 4	0.40	Down
Ovary	79 ± 4	4 of 4	2.10	Up
Testis	8 ± 1	0 of 4	0.20	Down
Male accessory glands	42 ± 2	4 of 4	1.10	None
Virgin spermatheca	24 ± 3	3 of 4	0.63	Down
Mated spermatheca	35 ± 4	3 of 4	0.91	None
Adult carcass	8 ± 1	0 of 4	0.20	Down
Larval CNS	17 ± 3	1 of 4	0.45	Down
Larval Salivary gland	251 ± 19	4 of 4	6.51	Up
Larval midgut	309 ± 20	4 of 4	8.03	Up
Larval tubule	299 ± 9	4 of 4	7.80	Up
Larval hindgut	124 ± 4	4 of 4	3.23	Up
Larval fat body	170 ± 8	4 of 4	4.40	Up
Larval trachea	94 ± 3	4 of 4	2.44	Up
Larval carcass	102 ± 6	4 of 4	2.66	Up
S2 cells (growing)	721 ± 19	4 of 4	18.72	Up
Whole fly	38 ± 2	4 of 4

Looking for CG7863-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720