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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7864-RA through 18771 annotations produced 1 hits



peroxin 10 (pex10):

Annotation Number : CG7864
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035233
Gbrowse : chr3L:1558781-1559863 (+) // 100.0 //
Probeset : 1632711_at
Accessions : protein= NP_647624;, nucleotide= NM_139367;
Pathway : 0005778 // peroxisomal membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0035233.
BDGP gene expression has embryonic in situ data for CG7864: 4 pix of staining in 1 body parts.
Homophila reports that CG7864 is a close match (2e-15) to human gene NALD;PEX10 (NP_722540), a gene associated with Adrenoleukodystrophy, neonatal, 202370 (3);Zellweger syndrome, 214100 (3).
VDRC has 2 RNAi stocks for FBgn0035233 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain48 14 of 4 0.40Down
Head76 44 of 4 0.70Down
Eye59 24 of 4 0.52Down
Thoracicoabdominal ganglion51 34 of 4 0.50Down
Salivary gland91 44 of 4 0.81Down
Crop352 54 of 4 3.10Up
Midgut156 74 of 4 1.40Up
Tubule110 24 of 4 1.00None
Hindgut171 74 of 4 1.50Up
Heart204 114 of 4 1.80Up
Fat body190 184 of 4 1.67Up
Ovary139 24 of 4 1.20Up
Testis129 84 of 4 1.10None
Male accessory glands74 64 of 4 0.70Down
Virgin spermatheca82 54 of 4 0.72Down
Mated spermatheca74 44 of 4 0.66Down
Adult carcass142 14 of 4 1.30Up
Larval CNS69 24 of 4 0.61Down
Larval Salivary gland63 44 of 4 0.56Down
Larval midgut83 34 of 4 0.74Down
Larval tubule80 44 of 4 0.70Down
Larval hindgut57 34 of 4 0.50Down
Larval fat body120 84 of 4 1.10None
Larval trachea64 44 of 4 0.57Down
Larval carcass52 34 of 4 0.46Down
S2 cells (growing)91 44 of 4 0.81Down
Whole fly113 44 of 4

Looking for CG7864-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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