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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7867-RA through 18771 annotations produced 1 hits



chr3L:14183971-14226351 (+) // 100.0 // (nuclear-fallout):

Annotation Number : CG7867
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1624744_a_at
Accessions : protein= , nucleotide= NP_001034006; /// NP_001034007; /// NP_001034008; /// NP_001034009; /// NP_001034010; /// NP_001034011;
Pathway : "0000915 // cytokinesis
Interpro : actomyosin contractile ring assembly // non-traceable author statement /// 0007017 // microtubule-based process // infe
FlyMine data for full length.
BioGrid reports that CG7867 interacts with CG8669 CG9609 CG3610 CG5433 CG4060 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain573 ± 84 of 4 1.80Up
Head838 ± 254 of 4 2.60Up
Eye1444 ± 1024 of 4 4.41Up
Thoracicoabdominal ganglion810 ± 154 of 4 2.50Up
Salivary gland1557 ± 794 of 4 4.75Up
Crop1806 ± 584 of 4 5.50Up
Midgut158 ± 84 of 4 0.50Down
Tubule380 ± 454 of 4 1.20None
Hindgut749 ± 134 of 4 2.30Up
Heart1537 ± 594 of 4 4.69Up
Fat body436 ± 354 of 4 1.33Up
Ovary251 ± 84 of 4 0.80Down
Testis132 ± 44 of 4 0.40Down
Male accessory glands137 ± 64 of 4 0.40Down
Virgin spermatheca459 ± 244 of 4 1.40Up
Mated spermatheca494 ± 324 of 4 1.51Up
Adult carcass577 ± 204 of 4 1.80Up
Larval CNS314 ± 204 of 4 0.96None
Larval Salivary gland223 ± 404 of 4 0.68None
Larval midgut181 ± 114 of 4 0.55Down
Larval tubule366 ± 214 of 4 1.10None
Larval hindgut623 ± 114 of 4 1.90Up
Larval fat body629 ± 464 of 4 1.90Up
Larval trachea670 ± 514 of 4 2.05Up
Larval carcass632 ± 484 of 4 1.93Up
S2 cells (growing)143 ± 164 of 4 0.44Down
Whole fly327 ± 184 of 4

Looking for CG7867-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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