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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7874-RA through 18771 annotations produced 1 hits



Mucin related 18B (Mur18B):

Annotation Number : CG7874
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030999
Gbrowse : chrX:19107289-19108971 (+) // 100.0 //
Probeset : 1641610_at
Accessions : protein= NP_573364;, nucleotide= NM_133136;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0030999.
BDGP gene expression has embryonic in situ data for CG7874: 6 pix of staining in 2 body parts.
VDRC has 1 RNAi stocks for FBgn0030999 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head5 ± 10 of 4 0.00Down
Eye9 ± 32 of 4 0.01Down
Thoracicoabdominal ganglion13 ± 41 of 4 0.00Down
Salivary gland13 ± 30 of 4 0.01Down
Crop9 ± 10 of 4 0.00Down
Midgut15 ± 72 of 4 0.00Down
Tubule6382 ± 2024 of 4 5.30Up
Hindgut17 ± 22 of 4 0.00Down
Heart67 ± 424 of 4 0.06Down
Fat body52 ± 673 of 4 0.04Down
Ovary4 ± 10 of 4 0.00Down
Testis7 ± 11 of 4 0.00Down
Male accessory glands12 ± 40 of 4 0.00Down
Virgin spermatheca99 ± 743 of 4 0.08Down
Mated spermatheca26 ± 82 of 4 0.02Down
Adult carcass66 ± 303 of 4 0.10Down
Larval CNS4 ± 21 of 4 0.00Down
Larval Salivary gland11 ± 12 of 4 0.01Down
Larval midgut18 ± 51 of 4 0.02Down
Larval tubule4924 ± 1154 of 4 4.10Up
Larval hindgut244 ± 174 of 4 0.20Down
Larval fat body36 ± 113 of 4 0.00Down
Larval trachea5 ± 21 of 4 0.00Down
Larval carcass18 ± 23 of 4 0.02Down
S2 cells (growing)2 ± 10 of 4 0.00Down
Whole fly1213 ± 1004 of 4

Looking for CG7874-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime