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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7879-RA through 18771 annotations produced 1 hits



(CG7879):

Annotation Number : CG7879
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035235
Gbrowse : chr3L:1559804-1568608 (-) // 99.87 //
Probeset : 1633635_s_at
Accessions : protein= NP_647626; /// NP_728631;, nucleotide= NM_139369; /// NM_167896;
Pathway : via spliceosome // inferred from mutant phenotype"
Interpro : 0005634 // nucleus // inferred by curator
FlyMine data for FBgn0035235.
BioGrid reports that CG7879 interacts with CG8407 CG9426 CG9654 .
VDRC has 1 RNAi stocks for FBgn0035235 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 14 of 4 2.70Up
Head24 24 of 4 1.20None
Eye33 24 of 4 1.68Up
Thoracicoabdominal ganglion46 44 of 4 2.40Up
Salivary gland31 40 of 4 1.57None
Crop28 11 of 4 1.40Up
Midgut20 10 of 4 1.10None
Tubule16 01 of 4 0.80Down
Hindgut20 20 of 4 1.00None
Heart16 21 of 4 0.82None
Fat body17 21 of 4 0.85None
Ovary40 24 of 4 2.00Up
Testis5 10 of 4 0.30Down
Male accessory glands31 22 of 4 1.60Up
Virgin spermatheca26 20 of 4 1.33None
Mated spermatheca26 20 of 4 1.35None
Adult carcass15 40 of 4 0.80None
Larval CNS84 24 of 4 4.23Up
Larval Salivary gland34 14 of 4 1.75Up
Larval midgut12 00 of 4 0.63Down
Larval tubule18 11 of 4 0.90None
Larval hindgut23 13 of 4 1.19None
Larval fat body20 20 of 4 1.00None
Larval trachea38 54 of 4 1.92Up
Larval carcass22 00 of 4 1.11None
S2 cells (growing)40 14 of 4 2.02Up
Whole fly19 21 of 4

Looking for CG7879-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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