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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7882-RB through 18771 annotations produced 1 hits



(CG7882):

Annotation Number : CG7882
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033047
Gbrowse : chr2R:1845223-1847225 (+) // 100.0 //
Probeset : 1625082_a_at
Accessions : protein= NP_610189; /// NP_724438;, nucleotide= NM_136345; /// NM_165450;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter
FlyMine data for FBgn0033047.
Homophila reports that CG7882 is a close match (6e-47) to human gene GLUT9;SLC2A9;UAQTL2 (NP_064425), a gene associated with {Uric acid concentration, serum, QTL 2}, 612076 (3).
VDRC has 3 RNAi stocks for FBgn0033047 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland12 ± 30 of 4 0.10Down
Crop1 ± 00 of 4 0.00Down
Midgut3 ± 10 of 4 0.00Down
Tubule3485 ± 1054 of 427.00Up
Hindgut2 ± 10 of 4 0.00Down
Heart3 ± 10 of 4 0.03Down
Fat body10 ± 140 of 4 0.08Down
Ovary1 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca8 ± 30 of 4 0.07Down
Mated spermatheca6 ± 10 of 4 0.05Down
Adult carcass11 ± 40 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.02Down
Larval Salivary gland3 ± 10 of 4 0.02Down
Larval midgut2 ± 00 of 4 0.02Down
Larval tubule3179 ± 104 of 424.70Up
Larval hindgut30 ± 51 of 4 0.23Down
Larval fat body3 ± 00 of 4 0.00Down
Larval trachea1 ± 00 of 4 0.01Down
Larval carcass2 ± 00 of 4 0.02Down
S2 cells (growing)1 ± 10 of 4 0.01Down
Whole fly129 ± 164 of 4

Looking for CG7882-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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