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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7883-RA through 18771 annotations produced 1 hits



eIF2B-alpha (eIF2B-alpha):

Annotation Number : CG7883
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039726
Gbrowse : chr3R:25760303-25761598 (-) // 100.0 //
Probeset : 1639421_at
Accessions : protein= NP_651752;, nucleotide= NM_143495;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity /// 0005851 // eukaryotic translation initiation f
Interpro : 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // tran
FlyMine data for FBgn0039726.
BDGP gene expression has embryonic in situ data for eIF2B-alpha: 4 pix of staining in 1 body parts.
Homophila reports that CG7883 is a close match (2e-14) to human gene EIF2B4 (NP_751945), a gene associated with Leukoencephaly with vanishing white matter, 603896 (3);Ovarioleukodystrophy, 603896 (3).
BioGrid reports that CG7883 interacts with CG9456 .
VDRC has 3 RNAi stocks for FBgn0039726 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain120 ± 24 of 4 0.90Down
Head146 ± 34 of 4 1.00None
Eye166 ± 94 of 4 1.18None
Thoracicoabdominal ganglion127 ± 54 of 4 0.90None
Salivary gland331 ± 114 of 4 2.35Up
Crop317 ± 34 of 4 2.30Up
Midgut185 ± 84 of 4 1.30Up
Tubule289 ± 14 of 4 2.10Up
Hindgut172 ± 84 of 4 1.20Up
Heart150 ± 104 of 4 1.06None
Fat body184 ± 254 of 4 1.31Up
Ovary179 ± 64 of 4 1.30Up
Testis40 ± 14 of 4 0.30Down
Male accessory glands188 ± 124 of 4 1.30Up
Virgin spermatheca198 ± 84 of 4 1.41Up
Mated spermatheca206 ± 124 of 4 1.46Up
Adult carcass164 ± 94 of 4 1.20None
Larval CNS150 ± 114 of 4 1.07None
Larval Salivary gland269 ± 194 of 4 1.91Up
Larval midgut115 ± 64 of 4 0.82Down
Larval tubule193 ± 44 of 4 1.40Up
Larval hindgut109 ± 64 of 4 0.77Down
Larval fat body135 ± 144 of 4 1.00None
Larval trachea125 ± 154 of 4 0.89None
Larval carcass186 ± 94 of 4 1.32Up
S2 cells (growing)150 ± 24 of 4 1.06None
Whole fly141 ± 44 of 4

Looking for CG7883-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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