Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7885-RA through 18771 annotations produced 1 hits



chr2L:13833338-13834306 (+) // 100.0 // (RNA polymerase II):

Annotation Number : CG7885
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1627827_a_at
Accessions : protein= , nucleotide= NP_477419;
Pathway : 0006350 // transcription // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II prom
Interpro : "0005665 // DNA-directed RNA polymerase II
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain136 54 of 4 0.70Down
Head127 54 of 4 0.70Down
Eye212 64 of 4 1.11None
Thoracicoabdominal ganglion132 54 of 4 0.70Down
Salivary gland159 64 of 4 0.83Down
Crop102 24 of 4 0.50Down
Midgut125 44 of 4 0.70Down
Tubule86 34 of 4 0.40Down
Hindgut105 64 of 4 0.50Down
Heart105 84 of 4 0.55Down
Fat body108 124 of 4 0.56Down
Ovary298 54 of 4 1.60Up
Testis65 34 of 4 0.30Down
Male accessory glands242 54 of 4 1.30Up
Virgin spermatheca165 24 of 4 0.86Down
Mated spermatheca153 64 of 4 0.80Down
Adult carcass93 64 of 4 0.50Down
Larval CNS365 134 of 4 1.90Up
Larval Salivary gland295 54 of 4 1.54Up
Larval midgut102 44 of 4 0.53Down
Larval tubule125 34 of 4 0.70Down
Larval hindgut117 54 of 4 0.61Down
Larval fat body130 94 of 4 0.70Down
Larval trachea193 164 of 4 1.01None
Larval carcass188 124 of 4 0.98None
S2 cells (growing)202 44 of 4 1.05None
Whole fly192 64 of 4

Looking for CG7885-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime