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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7887-RA through 18771 annotations produced 1 hits



Tachykinin-like receptor at 99D (Takr99D):

Annotation Number : CG7887
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004622
Gbrowse : chr3R:25776512-25795169 (-) // 100.0 //
Probeset : 1623899_at
Accessions : protein= NP_001163772; /// NP_524556;, nucleotide= NM_001170301; /// NM_079832;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0004622.
Homophila reports that CG7887 is a close match (2e-11) to human gene BCP;CBT;OPN1SW (NP_001699), a gene associated with Colorblindness, tritan (3).
TRiP has 1 RNAi stocks for FBgn0004622 available for purchase.
VDRC has 4 RNAi stocks for FBgn0004622 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain70 ± 34 of 413.30Up
Head12 ± 13 of 4 2.30Up
Eye5 ± 00 of 4 1.12None
Thoracicoabdominal ganglion37 ± 34 of 4 7.00Up
Salivary gland12 ± 30 of 4 2.29None
Crop38 ± 34 of 4 7.20Up
Midgut20 ± 03 of 4 3.90Up
Tubule10 ± 00 of 4 2.00Up
Hindgut27 ± 14 of 4 5.20Up
Heart13 ± 04 of 4 2.60Up
Fat body8 ± 50 of 4 1.62None
Ovary1 ± 00 of 4 0.30None
Testis1 ± 00 of 4 0.40None
Male accessory glands7 ± 21 of 4 1.50None
Virgin spermatheca7 ± 10 of 4 1.36None
Mated spermatheca6 ± 00 of 4 1.26None
Adult carcass7 ± 20 of 4 1.50None
Larval CNS38 ± 54 of 4 7.35Up
Larval Salivary gland5 ± 11 of 4 1.04None
Larval midgut18 ± 24 of 4 3.45Up
Larval tubule43 ± 14 of 4 8.30Up
Larval hindgut19 ± 04 of 4 3.73Up
Larval fat body1 ± 00 of 4 0.30None
Larval trachea5 ± 30 of 4 0.95None
Larval carcass3 ± 00 of 4 0.60None
S2 cells (growing)2 ± 00 of 4 0.46None
Whole fly5 ± 11 of 4

Looking for CG7887-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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