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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7888-RC through 18771 annotations produced 1 hits



(CG7888):

Annotation Number : CG7888
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036116
Gbrowse : chr3L:11047190-11052759 (+) // 100.0 //
Probeset : 1627964_s_at
Accessions : protein= NP_648425; /// NP_729651; /// NP_729652;, nucleotide= NM_140168; /// NM_168433; /// NM_168434;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0015171 // amino acid transmembrane transporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0036116.
VDRC has 2 RNAi stocks for FBgn0036116 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1331 494 of 411.70Up
Head540 84 of 4 4.70Up
Eye133 154 of 4 1.17None
Thoracicoabdominal ganglion1853 634 of 416.30Up
Salivary gland10 20 of 4 0.09Down
Crop43 34 of 4 0.40Down
Midgut2 00 of 4 0.00Down
Tubule57 124 of 4 0.50Down
Hindgut1995 424 of 417.50Up
Heart6 22 of 4 0.06Down
Fat body9 10 of 4 0.08Down
Ovary100 124 of 4 0.90None
Testis16 14 of 4 0.10Down
Male accessory glands32 14 of 4 0.30Down
Virgin spermatheca12 11 of 4 0.11Down
Mated spermatheca10 11 of 4 0.09Down
Adult carcass90 44 of 4 0.80Down
Larval CNS332 424 of 4 2.92Up
Larval Salivary gland3 00 of 4 0.03Down
Larval midgut7 10 of 4 0.06Down
Larval tubule600 164 of 4 5.30Up
Larval hindgut73 204 of 4 0.64None
Larval fat body1 00 of 4 0.00Down
Larval trachea41 194 of 4 0.36Down
Larval carcass24 82 of 4 0.22Down
S2 cells (growing)197 24 of 4 1.74Up
Whole fly113 74 of 4

Looking for CG7888-RC. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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