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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7890-RA through 18771 annotations produced 1 hits



CG7890 (Hs3st-B):

Annotation Number : CG7890
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031005
Gbrowse : chrX:19143107-19146079 (+) // 100.0 //
Probeset : 1638753_at
Accessions : protein= NP_573370;, nucleotide= NM_133142;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008146 // sulfotransferase activity // inferred fr
FlyMine data for FBgn0031005.
BDGP gene expression has embryonic in situ data for CG7890: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0031005 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain227 ± 64 of 433.80Up
Head40 ± 34 of 4 6.10Up
Eye12 ± 23 of 4 1.87None
Thoracicoabdominal ganglion173 ± 44 of 425.70Up
Salivary gland9 ± 40 of 4 1.39None
Crop1 ± 00 of 4 0.20None
Midgut5 ± 11 of 4 0.80None
Tubule6 ± 10 of 4 0.90None
Hindgut1 ± 10 of 4 0.30None
Heart3 ± 00 of 4 0.57None
Fat body6 ± 61 of 4 0.88None
Ovary1 ± 00 of 4 0.20None
Testis1 ± 10 of 4 0.30None
Male accessory glands3 ± 10 of 4 0.50None
Virgin spermatheca4 ± 00 of 4 0.65None
Mated spermatheca6 ± 21 of 4 0.92None
Adult carcass4 ± 10 of 4 0.60None
Larval CNS148 ± 204 of 422.10Up
Larval Salivary gland1 ± 00 of 4 0.23None
Larval midgut8 ± 12 of 4 1.21None
Larval tubule3 ± 10 of 4 0.50None
Larval hindgut2 ± 10 of 4 0.36None
Larval fat body2 ± 10 of 4 0.40None
Larval trachea2 ± 10 of 4 0.34None
Larval carcass1 ± 00 of 4 0.28None
S2 cells (growing)1 ± 00 of 4 0.20None
Whole fly6 ± 20 of 4

Looking for CG7890-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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