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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7891-RA through 18771 annotations produced 1 hits



CG7891 (Gie):

Annotation Number : CG7891
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037551
Gbrowse : chr3R:3952335-3954568 (+) // 100.0 //
Probeset : 1629715_at
Accessions : protein= NP_649769;, nucleotide= NM_141512;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or st
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from sequenc
FlyMine data for FBgn0037551.
BDGP gene expression has embryonic in situ data for CG7891: 17 pix of staining in 9 body parts.
Homophila reports that CG7891 is a close match (5e-19) to human gene CMRD;SAR1B;SARA2 (NP_057187), a gene associated with Anderson disease, 607689 (3);Chylomicron retention disease, 246700 (3).
VDRC has 1 RNAi stocks for FBgn0037551 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain275 ± 74 of 4 1.80Up
Head197 ± 264 of 4 1.30None
Eye210 ± 44 of 4 1.38Up
Thoracicoabdominal ganglion252 ± 234 of 4 1.70Up
Salivary gland264 ± 104 of 4 1.73Up
Crop232 ± 94 of 4 1.50Up
Midgut170 ± 34 of 4 1.10Up
Tubule78 ± 44 of 4 0.50Down
Hindgut206 ± 64 of 4 1.40Up
Heart195 ± 34 of 4 1.28Up
Fat body160 ± 204 of 4 1.05None
Ovary241 ± 54 of 4 1.60Up
Testis84 ± 24 of 4 0.60Down
Male accessory glands116 ± 54 of 4 0.80Down
Virgin spermatheca154 ± 94 of 4 1.01None
Mated spermatheca137 ± 54 of 4 0.90None
Adult carcass158 ± 74 of 4 1.00None
Larval CNS189 ± 164 of 4 1.24Up
Larval Salivary gland159 ± 64 of 4 1.04None
Larval midgut131 ± 14 of 4 0.86Down
Larval tubule399 ± 74 of 4 2.60Up
Larval hindgut173 ± 24 of 4 1.14Up
Larval fat body369 ± 414 of 4 2.40Up
Larval trachea175 ± 114 of 4 1.15Up
Larval carcass123 ± 124 of 4 0.81None
S2 cells (growing)429 ± 124 of 4 2.82Up
Whole fly152 ± 44 of 4

Looking for CG7891-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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