FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG7895-RA through 18771 annotations produced 1 hits

March 2006 (FlyBase/BDGP 5.3) (chr3R:17204700-17207692 (+) // 100.0 //):

Annotation Number : CG7895
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1637278_at
Accessions : protein= , nucleotide=
Interpro : "0001708 // cell fate specification // non-traceable author statement /// 0006355 // regulation of transcription
Homophila reports that CG7895 is a close match (2e-11) to human gene HOX7;HYD1;MSX1;OFC5 (NP_002439), a gene associated with Cleft lip/palate, nonsyndromic, 608874 (3);Hypodontia with orofacial cleft, 106600 (3);Hypodontia, autosomal dominant, 106600 (3);Witkop syndrome, 189500 (3).
BioGrid reports that CG7895 interacts with CG1322 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 0	0 of 4	0.50	None
Head	4 ± 1	0 of 4	0.50	None
Eye	2 ± 0	0 of 4	0.37	None
Thoracicoabdominal ganglion	4 ± 0	0 of 4	0.50	None
Salivary gland	9 ± 5	0 of 4	1.25	None
Crop	2 ± 0	0 of 4	0.30	None
Midgut	2 ± 1	0 of 4	0.30	None
Tubule	8 ± 1	0 of 4	1.10	None
Hindgut	6 ± 0	0 of 4	0.80	None
Heart	40 ± 2	4 of 4	5.10	Up
Fat body	4 ± 3	0 of 4	0.56	None
Ovary	1 ± 0	0 of 4	0.20	None
Testis	3 ± 0	0 of 4	0.40	None
Male accessory glands	5 ± 2	0 of 4	0.70	None
Virgin spermatheca	6 ± 1	0 of 4	0.85	None
Mated spermatheca	4 ± 1	0 of 4	0.56	None
Adult carcass	11 ± 5	0 of 4	1.40	None
Larval CNS	3 ± 1	0 of 4	0.49	None
Larval Salivary gland	1 ± 0	0 of 4	0.17	None
Larval midgut	2 ± 0	0 of 4	0.35	None
Larval tubule	4 ± 1	0 of 4	0.60	None
Larval hindgut	2 ± 0	0 of 4	0.31	None
Larval fat body	6 ± 4	0 of 4	0.80	None
Larval trachea	4 ± 5	0 of 4	0.62	None
Larval carcass	3 ± 1	0 of 4	0.45	None
S2 cells (growing)	4 ± 1	0 of 4	0.53	None
Whole fly	7 ± 2	1 of 4

Looking for CG7895-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720