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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7899-RA through 18771 annotations produced 1 hits



Acid phosphatase 1 (Acph-1):

Annotation Number : CG7899
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000032
Gbrowse : chr3R:25816862-25819130 (-) // 100.0 //
Probeset : 1640265_a_at
Accessions : protein= NP_524917; /// NP_733332;, nucleotide= NM_080178; /// NM_170453;
Interpro : 0003993 // acid phosphatase activity // inferred from sequence or structural similarity /// 0003993 // acid phosphatase
FlyMine data for FBgn0000032.
VDRC has 2 RNAi stocks for FBgn0000032 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain111 ± 44 of 4 0.40Down
Head80 ± 54 of 4 0.30Down
Eye78 ± 54 of 4 0.28Down
Thoracicoabdominal ganglion112 ± 14 of 4 0.40Down
Salivary gland343 ± 104 of 4 1.22Up
Crop132 ± 24 of 4 0.50Down
Midgut172 ± 164 of 4 0.60Down
Tubule72 ± 24 of 4 0.30Down
Hindgut127 ± 74 of 4 0.50Down
Heart194 ± 44 of 4 0.69Down
Fat body128 ± 44 of 4 0.46Down
Ovary518 ± 74 of 4 1.80Up
Testis214 ± 34 of 4 0.80Down
Male accessory glands524 ± 144 of 4 1.90Up
Virgin spermatheca194 ± 144 of 4 0.69Down
Mated spermatheca196 ± 104 of 4 0.70Down
Adult carcass106 ± 54 of 4 0.40Down
Larval CNS122 ± 44 of 4 0.43Down
Larval Salivary gland1026 ± 274 of 4 3.66Up
Larval midgut346 ± 144 of 4 1.23Up
Larval tubule269 ± 74 of 4 1.00None
Larval hindgut233 ± 74 of 4 0.83Down
Larval fat body307 ± 134 of 4 1.10None
Larval trachea285 ± 394 of 4 1.02None
Larval carcass235 ± 144 of 4 0.84Down
S2 cells (growing)232 ± 44 of 4 0.83Down
Whole fly280 ± 94 of 4

Looking for CG7899-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime