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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG7902-RA through 18771 annotations produced 1 hits

bagpipe (bap):

Annotation Number : CG7902
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004862
Gbrowse : chr3R:17214604-17216171 (+) // 100.0 //
Probeset : 1638565_at
Accessions : protein= NP_732637;, nucleotide= NM_169958;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0004862.
BDGP gene expression has embryonic in situ data for bap: 13 pix of staining in 10 body parts.
Homophila reports that CG7902 is a close match (6e-11) to human gene GCFX;PHOG;SHOX;SS (NP_000442), a gene associated with Langer mesomelic dysplasia, 249700 (3);Leri-Weill dyschondrosteosis, 127300 (3);Short stature, idiopathic familial, 300582 (3).
TRiP has 1 RNAi stocks for FBgn0004862 available for purchase.
VDRC has 1 RNAi stocks for FBgn0004862 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 23 of 4 0.60None
Head19 10 of 4 0.90None
Eye1 00 of 4 0.06Down
Thoracicoabdominal ganglion5 10 of 4 0.20Down
Salivary gland13 40 of 4 0.59None
Crop584 134 of 426.00Up
Midgut20 00 of 4 0.90None
Tubule6 10 of 4 0.30Down
Hindgut227 134 of 410.10Up
Heart109 34 of 4 4.88Up
Fat body30 53 of 4 1.34None
Ovary7 10 of 4 0.30Down
Testis10 10 of 4 0.50Down
Male accessory glands4 10 of 4 0.20Down
Virgin spermatheca9 20 of 4 0.44Down
Mated spermatheca7 30 of 4 0.32Down
Adult carcass22 50 of 4 1.00None
Larval CNS16 22 of 4 0.74None
Larval Salivary gland13 30 of 4 0.61None
Larval midgut20 20 of 4 0.90None
Larval tubule17 10 of 4 0.80None
Larval hindgut140 64 of 4 6.23Up
Larval fat body13 30 of 4 0.60None
Larval trachea6 70 of 4 0.29Down
Larval carcass23 21 of 4 1.03None
S2 cells (growing)7 10 of 4 0.31Down
Whole fly22 34 of 4

Looking for CG7902-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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