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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG7903-RA through 18771 annotations produced 1 hits



(CG7903):

Annotation Number : CG7903
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039730
Gbrowse : chr3R:25819195-25820931 (-) // 100.0 //
Probeset : 1624302_at
Accessions : protein= NP_651755;, nucleotide= NM_143498;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0039730.
BDGP gene expression has embryonic in situ data for CG7903: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0039730 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain203 ± 64 of 4 3.00Up
Head85 ± 54 of 4 1.20Up
Eye134 ± 64 of 4 1.97Up
Thoracicoabdominal ganglion103 ± 34 of 4 1.50Up
Salivary gland135 ± 84 of 4 1.98Up
Crop67 ± 34 of 4 1.00None
Midgut41 ± 34 of 4 0.60Down
Tubule104 ± 14 of 4 1.50Up
Hindgut88 ± 14 of 4 1.30Up
Heart56 ± 24 of 4 0.83Down
Fat body35 ± 14 of 4 0.52Down
Ovary123 ± 44 of 4 1.80Up
Testis41 ± 34 of 4 0.60Down
Male accessory glands61 ± 04 of 4 0.90None
Virgin spermatheca68 ± 24 of 4 1.00None
Mated spermatheca56 ± 34 of 4 0.83Down
Adult carcass43 ± 44 of 4 0.60Down
Larval CNS119 ± 64 of 4 1.75Up
Larval Salivary gland152 ± 64 of 4 2.23Up
Larval midgut48 ± 14 of 4 0.71Down
Larval tubule101 ± 94 of 4 1.50Up
Larval hindgut99 ± 14 of 4 1.45Up
Larval fat body35 ± 74 of 4 0.50Down
Larval trachea72 ± 104 of 4 1.06None
Larval carcass64 ± 64 of 4 0.94None
S2 cells (growing)126 ± 24 of 4 1.84Up
Whole fly68 ± 24 of 4

Looking for CG7903-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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