FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG7904-RA through 18771 annotations produced 1 hits

activin receptor (put):

Annotation Number : CG7904
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003169
Gbrowse : chr3R:10446045-10451421 (-) // 100.0 //
Probeset : 1631769_at
Accessions : protein= NP_731926;, nucleotide= NM_169591;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007443 // Malpighian tubule morphogenesis // inferred from
Interpro : 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural simila
FlyMine data for FBgn0003169.
Homophila reports that CG7904 is a close match (4e-12) to human gene TYK2 (NP_003322), a gene associated with Protein-tyrosine kinase 2 deficiency, 611521 (3).
BioGrid reports that CG7904 interacts with CG9925 CG4920 CG10574 CG8980 CG5650 CG5650 CG4974 CG14026 CG14026 CG14026 CG14026 CG8224 .
TRiP has 4 RNAi stocks for FBgn0003169 available for purchase.
VDRC has 4 RNAi stocks for FBgn0003169 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	183 ± 9	4 of 4	0.60	Down
Head	224 ± 8	4 of 4	0.70	Down
Eye	141 ± 3	4 of 4	0.44	Down
Thoracicoabdominal ganglion	165 ± 2	4 of 4	0.50	Down
Salivary gland	234 ± 10	4 of 4	0.72	Down
Crop	326 ± 15	4 of 4	1.00	None
Midgut	296 ± 3	4 of 4	0.90	None
Tubule	604 ± 29	4 of 4	1.90	Up
Hindgut	256 ± 7	4 of 4	0.80	Down
Heart	200 ± 6	4 of 4	0.62	Down
Fat body	424 ± 16	4 of 4	1.30	Up
Ovary	922 ± 12	4 of 4	2.80	Up
Testis	68 ± 2	4 of 4	0.20	Down
Male accessory glands	298 ± 7	4 of 4	0.90	None
Virgin spermatheca	504 ± 15	4 of 4	1.55	Up
Mated spermatheca	449 ± 15	4 of 4	1.38	Up
Adult carcass	262 ± 11	4 of 4	0.80	Down
Larval CNS	300 ± 6	4 of 4	0.92	None
Larval Salivary gland	334 ± 16	4 of 4	1.03	None
Larval midgut	347 ± 23	4 of 4	1.07	None
Larval tubule	449 ± 6	4 of 4	1.40	Up
Larval hindgut	382 ± 4	4 of 4	1.18	Up
Larval fat body	293 ± 24	4 of 4	0.90	None
Larval trachea	354 ± 25	4 of 4	1.09	None
Larval carcass	409 ± 4	4 of 4	1.26	Up
S2 cells (growing)	394 ± 5	4 of 4	1.21	Up
Whole fly	325 ± 14	4 of 4

Looking for CG7904-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720