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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG7904-RA through 18771 annotations produced 1 hits

activin receptor (put):

Annotation Number : CG7904
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003169
Gbrowse : chr3R:10446045-10451421 (-) // 100.0 //
Probeset : 1631769_at
Accessions : protein= NP_731926;, nucleotide= NM_169591;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007443 // Malpighian tubule morphogenesis // inferred from
Interpro : 0005886 // plasma membrane // not recorded /// 0005886 // plasma membrane // inferred from sequence or structural simila
FlyMine data for FBgn0003169.
Homophila reports that CG7904 is a close match (4e-12) to human gene TYK2 (NP_003322), a gene associated with Protein-tyrosine kinase 2 deficiency, 611521 (3).
BioGrid reports that CG7904 interacts with CG9925 CG4920 CG10574 CG8980 CG5650 CG5650 CG4974 CG14026 CG14026 CG14026 CG14026 CG8224 .
TRiP has 4 RNAi stocks for FBgn0003169 available for purchase.
VDRC has 4 RNAi stocks for FBgn0003169 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain183 94 of 4 0.60Down
Head224 84 of 4 0.70Down
Eye141 34 of 4 0.44Down
Thoracicoabdominal ganglion165 24 of 4 0.50Down
Salivary gland234 104 of 4 0.72Down
Crop326 154 of 4 1.00None
Midgut296 34 of 4 0.90None
Tubule604 294 of 4 1.90Up
Hindgut256 74 of 4 0.80Down
Heart200 64 of 4 0.62Down
Fat body424 164 of 4 1.30Up
Ovary922 124 of 4 2.80Up
Testis68 24 of 4 0.20Down
Male accessory glands298 74 of 4 0.90None
Virgin spermatheca504 154 of 4 1.55Up
Mated spermatheca449 154 of 4 1.38Up
Adult carcass262 114 of 4 0.80Down
Larval CNS300 64 of 4 0.92None
Larval Salivary gland334 164 of 4 1.03None
Larval midgut347 234 of 4 1.07None
Larval tubule449 64 of 4 1.40Up
Larval hindgut382 44 of 4 1.18Up
Larval fat body293 244 of 4 0.90None
Larval trachea354 254 of 4 1.09None
Larval carcass409 44 of 4 1.26Up
S2 cells (growing)394 54 of 4 1.21Up
Whole fly325 144 of 4

Looking for CG7904-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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