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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG7916-RA through 18771 annotations produced 1 hits


Annotation Number : CG7916
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028534
Gbrowse : chr2L:13846756-13847800 (+) // 100.0 //
Probeset : 1623817_at
Accessions : protein= NP_609682;, nucleotide= NM_135838;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0028534.
BDGP gene expression has embryonic in situ data for BG:DS00941.13: 4 pix of staining in 1 body parts.
BioGrid reports that CG7916 interacts with CG9285 .
VDRC has 2 RNAi stocks for FBgn0028534 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye6 31 of 4 0.01Down
Thoracicoabdominal ganglion5 00 of 4 0.00Down
Salivary gland9 20 of 4 0.02Down
Crop3 11 of 4 0.00Down
Midgut4671 1284 of 4 9.60Up
Tubule4 10 of 4 0.00Down
Hindgut4 11 of 4 0.00Down
Heart3 01 of 4 0.01Down
Fat body2 20 of 4 0.01Down
Ovary2 10 of 4 0.00Down
Testis4 01 of 4 0.00Down
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca2 00 of 4 0.00Down
Mated spermatheca0 00 of 4 0.00Down
Adult carcass3 00 of 4 0.00Down
Larval CNS0 00 of 4 0.00Down
Larval Salivary gland2 00 of 4 0.00Down
Larval midgut3682 2404 of 4 7.57Up
Larval tubule6 12 of 4 0.00Down
Larval hindgut69 94 of 4 0.14Down
Larval fat body8 21 of 4 0.00Down
Larval trachea4 20 of 4 0.01Down
Larval carcass2 10 of 4 0.00Down
S2 cells (growing)29 14 of 4 0.06Down
Whole fly486 1154 of 4

Looking for CG7916-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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